1. Home
  2. Species
  3. Sorghum bicolor
  4. Sequence
  5. Sobic.001G300800.2

Sobic.001G300800.2


Description : Unknown function


Gene families : OG_42_0000145 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000145_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.001G300800.2
Cluster HCAA Clusters: Cluster_123

Target Alias Description ECC score Gene Family Method Actions
At1g65680 No alias Putative expansin-B2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHY6] 0.04 Orthogroups_2024-Update
Bradi3g50740 No alias expansin B2 0.04 Orthogroups_2024-Update
Brara.E00483.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.K00035.1 No alias beta-class expansin 0.05 Orthogroups_2024-Update
GRMZM2G059785 No alias expansin B2 0.02 Orthogroups_2024-Update
GRMZM2G401983 No alias expansin B2 0.03 Orthogroups_2024-Update
Glyma.11G166546 No alias expansin B2 0.03 Orthogroups_2024-Update
HORVU4Hr1G088080.4 No alias Unknown function 0.04 Orthogroups_2024-Update
HORVU4Hr1G088140.2 No alias Unknown function 0.04 Orthogroups_2024-Update
PSME_00008080-RA No alias (q7x6j9|exb17_orysa : 305.0) Expansin-B17 precursor... 0.04 Orthogroups_2024-Update
PSME_00015392-RA No alias (at2g20750 : 239.0) member of BETA-EXPANSINS. Naming... 0.03 Orthogroups_2024-Update
PSME_00038846-RA No alias (at2g20750 : 157.0) member of BETA-EXPANSINS. Naming... 0.02 Orthogroups_2024-Update
Potri.019G101900 No alias expansin B3 0.04 Orthogroups_2024-Update
Pp1s147_37V6 No alias beta-expansin 3 0.02 Orthogroups_2024-Update
Pp1s251_59V6 No alias beta-expansin 3 0.04 Orthogroups_2024-Update
Pp1s313_58V6 No alias beta-expansin 3 0.03 Orthogroups_2024-Update
Seita.1G260700.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.9G157100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.9G326900.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.001G155600.3 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.001G301000.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.001G542100.1 No alias Unknown function 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity IEP Predicted GO
MF GO:0003989 acetyl-CoA carboxylase activity IEP Predicted GO
MF GO:0004097 catechol oxidase activity IEP Predicted GO
BP GO:0006629 lipid metabolic process IEP Predicted GO
BP GO:0006694 steroid biosynthetic process IEP Predicted GO
BP GO:0008202 steroid metabolic process IEP Predicted GO
BP GO:0008610 lipid biosynthetic process IEP Predicted GO
BP GO:0009719 response to endogenous stimulus IEP Predicted GO
BP GO:0009725 response to hormone IEP Predicted GO
BP GO:0009733 response to auxin IEP Predicted GO
BP GO:0010033 response to organic substance IEP Predicted GO
MF GO:0016229 steroid dehydrogenase activity IEP Predicted GO
MF GO:0016421 CoA carboxylase activity IEP Predicted GO
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP Predicted GO
MF GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor IEP Predicted GO
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Predicted GO
MF GO:0016885 ligase activity, forming carbon-carbon bonds IEP Predicted GO
MF GO:0033764 steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Predicted GO
BP GO:0042221 response to chemical IEP Predicted GO
MF GO:0051087 chaperone binding IEP Predicted GO
MF GO:0051213 dioxygenase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR007117 Expansin_CBD 229 310
IPR009009 RlpA-like_DPBB 138 217
No external refs found!