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  5. Sobic.001G301600.1

Sobic.001G301600.1


Description : Unknown function


Gene families : OG_42_0000145 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000145_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.001G301600.1
Cluster HCAA Clusters: Cluster_100

Target Alias Description ECC score Gene Family Method Actions
At1g65680 No alias Putative expansin-B2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHY6] 0.04 Orthogroups_2024-Update
At2g20750 No alias Expansin-B1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKU2] 0.02 Orthogroups_2024-Update
At4g28250 No alias EXPB3 [Source:UniProtKB/TrEMBL;Acc:A0A178USU9] 0.03 Orthogroups_2024-Update
Bradi3g33130 No alias expansin B2 0.03 Orthogroups_2024-Update
Bradi3g50740 No alias expansin B2 0.07 Orthogroups_2024-Update
Brara.G00015.1 No alias beta-class expansin 0.03 Orthogroups_2024-Update
Brara.K00035.1 No alias beta-class expansin 0.04 Orthogroups_2024-Update
HORVU4Hr1G088080.4 No alias Unknown function 0.02 Orthogroups_2024-Update
LOC_Os02g44108 No alias expansin precursor, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os10g40720 No alias expansin precursor, putative, expressed 0.03 Orthogroups_2024-Update
MA_10427897g0010 No alias (q7x6j9|exb17_orysa : 304.0) Expansin-B17 precursor... 0.02 Orthogroups_2024-Update
MA_166764g0010 No alias (q7x6j9|exb17_orysa : 194.0) Expansin-B17 precursor... 0.04 Orthogroups_2024-Update
PSME_00003968-RA No alias (q7x6j9|exb17_orysa : 259.0) Expansin-B17 precursor... 0.03 Orthogroups_2024-Update
PSME_00007984-RA No alias (at2g20750 : 186.0) member of BETA-EXPANSINS. Naming... 0.03 Orthogroups_2024-Update
PSME_00008080-RA No alias (q7x6j9|exb17_orysa : 305.0) Expansin-B17 precursor... 0.04 Orthogroups_2024-Update
PSME_00009595-RA No alias (q7x6j9|exb17_orysa : 96.7) Expansin-B17 precursor... 0.03 Orthogroups_2024-Update
PSME_00014538-RA No alias (q6h676|exb11_orysa : 160.0) Expansin-B11 precursor... 0.02 Orthogroups_2024-Update
PSME_00015392-RA No alias (at2g20750 : 239.0) member of BETA-EXPANSINS. Naming... 0.03 Orthogroups_2024-Update
PSME_00024925-RA No alias (q7x6j9|exb17_orysa : 300.0) Expansin-B17 precursor... 0.03 Orthogroups_2024-Update
PSME_00038846-RA No alias (at2g20750 : 157.0) member of BETA-EXPANSINS. Naming... 0.03 Orthogroups_2024-Update
PSME_00039752-RA No alias (q7x6j9|exb17_orysa : 251.0) Expansin-B17 precursor... 0.03 Orthogroups_2024-Update
Potri.019G101900 No alias expansin B3 0.02 Orthogroups_2024-Update
Pp1s100_99V6 No alias beta-expansin 3 0.02 Orthogroups_2024-Update
Pp1s147_37V6 No alias beta-expansin 3 0.04 Orthogroups_2024-Update
Pp1s251_59V6 No alias beta-expansin 3 0.04 Orthogroups_2024-Update
Pp1s313_58V6 No alias beta-expansin 3 0.03 Orthogroups_2024-Update
Pp1s313_59V6 No alias beta-expansin 3 0.03 Orthogroups_2024-Update
Seita.2G122700.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.9G326300.1 No alias Unknown function 0.07 Orthogroups_2024-Update
Seita.9G577300.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sopen03g024200 No alias Pollen allergen 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005576 extracellular region IEP Predicted GO
CC GO:0005618 cell wall IEP Predicted GO
CC GO:0009512 cytochrome b6f complex IEP Predicted GO
CC GO:0009521 photosystem IEP Predicted GO
CC GO:0009523 photosystem II IEP Predicted GO
CC GO:0009654 photosystem II oxygen evolving complex IEP Predicted GO
MF GO:0015399 primary active transmembrane transporter activity IEP Predicted GO
MF GO:0015405 P-P-bond-hydrolysis-driven transmembrane transporter activity IEP Predicted GO
BP GO:0015979 photosynthesis IEP Predicted GO
BP GO:0015985 energy coupled proton transport, down electrochemical gradient IEP Predicted GO
BP GO:0015986 ATP synthesis coupled proton transport IEP Predicted GO
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Predicted GO
MF GO:0019829 cation-transporting ATPase activity IEP Predicted GO
CC GO:0019898 extrinsic component of membrane IEP Predicted GO
MF GO:0022853 active ion transmembrane transporter activity IEP Predicted GO
MF GO:0030145 manganese ion binding IEP Predicted GO
CC GO:0030312 external encapsulating structure IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
MF GO:0042623 ATPase activity, coupled IEP Predicted GO
MF GO:0042625 ATPase coupled ion transmembrane transporter activity IEP Predicted GO
MF GO:0042626 ATPase activity, coupled to transmembrane movement of substances IEP Predicted GO
MF GO:0043492 ATPase activity, coupled to movement of substances IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044425 membrane part IEP Predicted GO
CC GO:0044436 thylakoid part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
MF GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism IEP Predicted GO
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP Predicted GO
CC GO:0048046 apoplast IEP Predicted GO
BP GO:0048364 root development IEP Predicted GO
BP GO:0048367 shoot system development IEP Predicted GO
BP GO:0048731 system development IEP Predicted GO
CC GO:0070069 cytochrome complex IEP Predicted GO
CC GO:0098796 membrane protein complex IEP Predicted GO
BP GO:0099402 plant organ development IEP Predicted GO
CC GO:1990204 oxidoreductase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR009009 RlpA-like_DPBB 91 171
IPR007117 Expansin_CBD 184 265
No external refs found!