Sobic.001G314400.1

Description : MADS/AGL-type transcription factor

Gene families : OG_42_0000009 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor: Sobic.001G314400.1
Cluster	HCAA Clusters: Cluster_57

Target	Alias	Description	ECC score	Gene Family Method
A4A49_07845	No alias	agamous-like mads-box protein agl8	0.05	Orthogroups_2024-Update
A4A49_14235	No alias	developmental protein sepallata 1	0.03	Orthogroups_2024-Update
A4A49_16645	No alias	agamous-like mads-box protein agl11	0.02	Orthogroups_2024-Update
A4A49_18989	No alias	agamous-like mads-box protein agl19	0.03	Orthogroups_2024-Update
A4A49_19521	No alias	developmental protein sepallata 1	0.04	Orthogroups_2024-Update
At1g77980	No alias	Agamous-like MADS-box protein AGL66...	0.02	Orthogroups_2024-Update
Bradi1g27901	No alias	AGAMOUS-like 61	0.04	Orthogroups_2024-Update
Bradi5g21700	No alias	K-box region and MADS-box transcription factor family protein	0.02	Orthogroups_2024-Update
Brara.B01837.1	No alias	regulatory protein *(AP1/CAL/FUL) of floral meristem...	0.02	Orthogroups_2024-Update
Brara.C04645.1	No alias	MADS/AGL-type transcription factor	0.04	Orthogroups_2024-Update
Brara.D02091.1	No alias	MADS/AGL-type transcription factor	0.02	Orthogroups_2024-Update
Brara.D02757.1	No alias	MADS/AGL-type transcription factor	0.02	Orthogroups_2024-Update
Brara.F03360.1	No alias	regulatory protein *(SEPALLATA) of floral meristem...	0.03	Orthogroups_2024-Update
Brara.G01735.1	No alias	MADS/AGL-type transcription factor	0.03	Orthogroups_2024-Update
Brara.H01578.1	No alias	MADS/AGL-type transcription factor	0.02	Orthogroups_2024-Update
Brara.I03027.1	No alias	regulatory protein *(SEPALLATA) of floral meristem...	0.03	Orthogroups_2024-Update
Brara.K00360.1	No alias	MADS/AGL-type transcription factor	0.02	Orthogroups_2024-Update
GRMZM2G003514	No alias	AGAMOUS-like 6	0.03	Orthogroups_2024-Update
GRMZM2G137510	No alias	AGAMOUS-like 8	0.02	Orthogroups_2024-Update
GRMZM2G152415	No alias	AGAMOUS-like 66	0.02	Orthogroups_2024-Update
Glyma.01G064100	No alias	K-box region and MADS-box transcription factor family protein	0.03	Orthogroups_2024-Update
Glyma.03G019300	No alias	AGAMOUS-like 20	0.03	Orthogroups_2024-Update
Glyma.05G018900	No alias	K-box region and MADS-box transcription factor family protein	0.02	Orthogroups_2024-Update
Glyma.05G163200	No alias	K-box region and MADS-box transcription factor family protein	0.07	Orthogroups_2024-Update
Glyma.06G117600	No alias	K-box region and MADS-box transcription factor family protein	0.02	Orthogroups_2024-Update
Glyma.07G081300	No alias	AGAMOUS-like 6	0.02	Orthogroups_2024-Update
Glyma.10G085100	No alias	AGAMOUS-like 62	0.02	Orthogroups_2024-Update
Glyma.13G255200	No alias	AGAMOUS-like 21	0.02	Orthogroups_2024-Update
Glyma.16G091300	No alias	K-box region and MADS-box transcription factor family protein	0.02	Orthogroups_2024-Update
Glyma.17G081200	No alias	AGAMOUS-like 8	0.02	Orthogroups_2024-Update
Glyma.20G136600	No alias	AGAMOUS-like 62	0.03	Orthogroups_2024-Update
HORVU3Hr1G095090.1	No alias	MADS/AGL-type transcription factor	0.04	Orthogroups_2024-Update
HORVU7Hr1G081190.1	No alias	MADS/AGL-type transcription factor	0.03	Orthogroups_2024-Update
LOC_Os04g23910	No alias	OsMADS25 - MADS-box family gene with MIKCc type-box, expressed	0.02	Orthogroups_2024-Update
LOC_Os06g30830	No alias	OsMADS76 - MADS-box family gene with M-alpha type-box, expressed	0.02	Orthogroups_2024-Update
MA_333471g0010	No alias	(at2g45660 : 106.0) Controls flowering and is required...	0.03	Orthogroups_2024-Update
PSME_00013164-RA	No alias	(at4g11880 : 108.0) AGL12, AGL14, and AGL17 are all...	0.03	Orthogroups_2024-Update
Potri.001G284301	No alias	AGAMOUS-like 21	0.02	Orthogroups_2024-Update
Potri.004G064300	No alias	K-box region and MADS-box transcription factor family protein	0.03	Orthogroups_2024-Update
Potri.004G130900	No alias	AGAMOUS-like 62	0.02	Orthogroups_2024-Update
Potri.004G131100	No alias	AGAMOUS-like 29	0.02	Orthogroups_2024-Update
Potri.005G182200	No alias	K-box region and MADS-box transcription factor family protein	0.03	Orthogroups_2024-Update
Potri.007G115000	No alias	K-box region and MADS-box transcription factor family protein	0.03	Orthogroups_2024-Update
Pp1s209_130V6	No alias	mads-box transcription factor	0.06	Orthogroups_2024-Update
Pp1s88_174V6	No alias	mads box	0.03	Orthogroups_2024-Update
Pp1s8_101V6	No alias	mikc* mads-box transcription factor	0.02	Orthogroups_2024-Update
Seita.1G273400.1	No alias	regulatory protein *(SEPALLATA) of floral meristem...	0.02	Orthogroups_2024-Update
Seita.2G002300.1	No alias	regulatory protein *(AP1/CAL/FUL) of floral meristem...	0.06	Orthogroups_2024-Update
Seita.3G280400.1	No alias	MADS/AGL-type transcription factor	0.04	Orthogroups_2024-Update
Seita.6G194800.1	No alias	MADS/AGL-type transcription factor	0.03	Orthogroups_2024-Update
Seita.9G561000.1	No alias	MADS/AGL-type transcription factor	0.03	Orthogroups_2024-Update
Solyc02g071730	No alias	Tomato AGAMOUS 1	0.03	Orthogroups_2024-Update
Solyc05g015730	No alias	No description available	0.03	Orthogroups_2024-Update
Solyc10g017630	No alias	MADS-box transcription factor (AHRD V3.3 *** Q1EMR8_PLAMJ)	0.04	Orthogroups_2024-Update
Sopen01g045900	No alias	SRF-type transcription factor (DNA-binding and...	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	16Dec
MF	GO:0003700	DNA-binding transcription factor activity	IEA	16Dec
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	16Dec
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	16Dec
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0046983	protein dimerization activity	IEA	16Dec
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0010215	cellulose microfibril organization	IEP	Predicted GO
BP	GO:0030198	extracellular matrix organization	IEP	Predicted GO
BP	GO:0043062	extracellular structure organization	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR002100	TF_MADSbox	10	57
IPR002487	TF_Kbox	84	170

External Links

No external refs found!

Sobic.001G314400.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation