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  5. Sobic.001G333000.1

Sobic.001G333000.1


Description : Unknown function


Gene families : OG_42_0008246 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0008246_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.001G333000.1
Cluster HCAA Clusters: Cluster_1

Target Alias Description ECC score Gene Family Method Actions
HORVU4Hr1G011420.3 No alias Unknown function 0.03 Orthogroups_2024-Update
Potri.006G264800 No alias proton gradient regulation 3 0.03 Orthogroups_2024-Update
Solyc04g015440 No alias Pentatricopeptide repeat-containing protein, putative... 0.07 Orthogroups_2024-Update
Sopen04g007490 No alias PPR repeat family 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0004559 alpha-mannosidase activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
BP GO:0006013 mannose metabolic process IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
MF GO:0015923 mannosidase activity IEP Predicted GO
MF GO:0016730 oxidoreductase activity, acting on iron-sulfur proteins as donors IEP Predicted GO
BP GO:0019318 hexose metabolic process IEP Predicted GO
MF GO:0051087 chaperone binding IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR033443 PPR_long 116 259
IPR002885 Pentatricopeptide_repeat 694 738
IPR002885 Pentatricopeptide_repeat 831 880
IPR002885 Pentatricopeptide_repeat 376 424
IPR002885 Pentatricopeptide_repeat 516 561
IPR002885 Pentatricopeptide_repeat 971 1011
IPR002885 Pentatricopeptide_repeat 272 317
IPR002885 Pentatricopeptide_repeat 901 945
IPR002885 Pentatricopeptide_repeat 764 809
IPR002885 Pentatricopeptide_repeat 446 494
IPR002885 Pentatricopeptide_repeat 349 374
IPR002885 Pentatricopeptide_repeat 664 689
No external refs found!