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  5. Sobic.001G357200.1

Sobic.001G357200.1


Description : plastidial ribonucleoprotein *(CP29)


Gene families : OG_42_0002384 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002384_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.001G357200.1
Cluster HCAA Clusters: Cluster_1

Target Alias Description ECC score Gene Family Method Actions
Bradi1g20440 No alias chloroplast RNA-binding protein 29 0.07 Orthogroups_2024-Update
Bradi1g61250 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.04 Orthogroups_2024-Update
Brara.E00783.1 No alias plastidial ribonucleoprotein *(CP29) 0.03 Orthogroups_2024-Update
Brara.I03035.1 No alias plastidial ribonucleoprotein *(CP29) 0.02 Orthogroups_2024-Update
GRMZM2G068715 No alias chloroplast RNA-binding protein 29 0.08 Orthogroups_2024-Update
GRMZM2G158835 No alias chloroplast RNA-binding protein 29 0.04 Orthogroups_2024-Update
Glyma.13G145200 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.04 Orthogroups_2024-Update
HORVU3Hr1G083830.1 No alias Unknown function 0.04 Orthogroups_2024-Update
HORVU4Hr1G048440.1 No alias plastidial ribonucleoprotein *(CP29) 0.05 Orthogroups_2024-Update
LOC_Os07g43810 No alias RNA recognition motif containing protein, putative, expressed 0.03 Orthogroups_2024-Update
Mp8g03420.1 No alias 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.02 Orthogroups_2024-Update
Potri.006G127200 No alias chloroplast RNA-binding protein 29 0.06 Orthogroups_2024-Update
Potri.016G090700 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.06 Orthogroups_2024-Update
Seita.9G388600.1 No alias plastidial ribonucleoprotein *(CP29) 0.12 Orthogroups_2024-Update
Solyc09g007850 No alias RNA binding protein (AHRD V3.3 *** Q39209_ARATH) 0.03 Orthogroups_2024-Update
Solyc10g086150 No alias RNA-binding (RRM/RBD/RNP motifs) family protein (AHRD... 0.07 Orthogroups_2024-Update
Sopen09g002690 No alias RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 0.06 Orthogroups_2024-Update
Sopen10g035530 No alias RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 0.08 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity IEP Predicted GO
MF GO:0004518 nuclease activity IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
BP GO:0006259 DNA metabolic process IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006298 mismatch repair IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
MF GO:0008175 tRNA methyltransferase activity IEP Predicted GO
MF GO:0008176 tRNA (guanine-N7-)-methyltransferase activity IEP Predicted GO
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Predicted GO
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Predicted GO
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0030983 mismatched DNA binding IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO
MF GO:0071949 FAD binding IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR000504 RRM_dom 85 155
IPR000504 RRM_dom 179 249
No external refs found!