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  5. Sobic.001G368500.1

Sobic.001G368500.1


Description : component *(uL6c) of large plastid ribosomal-subunit proteome


Gene families : OG_42_0002024 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002024_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.001G368500.1
Cluster HCAA Clusters: Cluster_146

Target Alias Description ECC score Gene Family Method Actions
A4A49_09051 No alias 50s ribosomal protein l6, chloroplastic 0.06 Orthogroups_2024-Update
At2g18400 No alias Putative ribosomal protein L6... 0.02 Orthogroups_2024-Update
Bradi1g62170 No alias Ribosomal protein L6 family 0.1 Orthogroups_2024-Update
Brara.I05467.1 No alias component *(uL6c) of large plastid ribosomal-subunit proteome 0.03 Orthogroups_2024-Update
Brara.J00339.1 No alias component *(uL6c) of large plastid ribosomal-subunit proteome 0.06 Orthogroups_2024-Update
Cre09.g415950 No alias Ribosomal protein L6 family 0.12 Orthogroups_2024-Update
GRMZM2G086788 No alias Ribosomal protein L6 family 0.06 Orthogroups_2024-Update
Glyma.16G189100 No alias Ribosomal protein L6 family 0.05 Orthogroups_2024-Update
HORVU4Hr1G040950.3 No alias component *(uL6c) of large plastid ribosomal-subunit proteome 0.13 Orthogroups_2024-Update
Kfl00137_0220 kfl00137_0220_v1.1 (at1g05190 : 221.0) embryo defective 2394 (emb2394);... 0.07 Orthogroups_2024-Update
LOC_Os03g24020 No alias ribosomal protein L6, putative, expressed 0.04 Orthogroups_2024-Update
PSME_00056369-RA No alias (at1g05190 : 160.0) embryo defective 2394 (emb2394);... 0.02 Orthogroups_2024-Update
Potri.014G153000 No alias Ribosomal protein L6 family 0.11 Orthogroups_2024-Update
Pp1s138_83V6 No alias 50s ribosomal protein l6 0.14 Orthogroups_2024-Update
Pp1s431_3V6 No alias 50s ribosomal protein l6 0.1 Orthogroups_2024-Update
Seita.9G400600.1 No alias component *(uL6c) of large plastid ribosomal-subunit proteome 0.23 Orthogroups_2024-Update
Solyc12g100160 No alias Ribosomal protein L6 family (AHRD V3.3 *** AT1G05190.1) 0.09 Orthogroups_2024-Update
Sopen12g034790 No alias Ribosomal protein L6 0.16 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA 16Dec
CC GO:0005840 ribosome IEA 16Dec
BP GO:0006412 translation IEA 16Dec
MF GO:0019843 rRNA binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003746 translation elongation factor activity IEP Predicted GO
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Predicted GO
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006298 mismatch repair IEP Predicted GO
BP GO:0006352 DNA-templated transcription, initiation IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
BP GO:0006418 tRNA aminoacylation for protein translation IEP Predicted GO
BP GO:0006520 cellular amino acid metabolic process IEP Predicted GO
BP GO:0006605 protein targeting IEP Predicted GO
BP GO:0006612 protein targeting to membrane IEP Predicted GO
BP GO:0006613 cotranslational protein targeting to membrane IEP Predicted GO
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006886 intracellular protein transport IEP Predicted GO
BP GO:0008104 protein localization IEP Predicted GO
MF GO:0008312 7S RNA binding IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
MF GO:0016859 cis-trans isomerase activity IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Predicted GO
MF GO:0030983 mismatched DNA binding IEP Predicted GO
BP GO:0033036 macromolecule localization IEP Predicted GO
BP GO:0033365 protein localization to organelle IEP Predicted GO
BP GO:0034613 cellular protein localization IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
BP GO:0043038 amino acid activation IEP Predicted GO
BP GO:0043039 tRNA aminoacylation IEP Predicted GO
BP GO:0045047 protein targeting to ER IEP Predicted GO
BP GO:0045184 establishment of protein localization IEP Predicted GO
MF GO:0046422 violaxanthin de-epoxidase activity IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
CC GO:0048500 signal recognition particle IEP Predicted GO
BP GO:0070727 cellular macromolecule localization IEP Predicted GO
BP GO:0070972 protein localization to endoplasmic reticulum IEP Predicted GO
BP GO:0071702 organic substance transport IEP Predicted GO
BP GO:0071705 nitrogen compound transport IEP Predicted GO
BP GO:0072594 establishment of protein localization to organelle IEP Predicted GO
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP Predicted GO
BP GO:0072657 protein localization to membrane IEP Predicted GO
BP GO:0090150 establishment of protein localization to membrane IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
InterPro domains Description Start Stop
IPR020040 Ribosomal_L6_a/b-dom 56 128
IPR020040 Ribosomal_L6_a/b-dom 136 210
No external refs found!