1. Home
  2. Species
  3. Sorghum bicolor
  4. Sequence
  5. Sobic.001G392100.1

Sobic.001G392100.1


Description : Unknown function


Gene families : OG_42_0010683 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0010683_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.001G392100.1
Cluster HCAA Clusters: Cluster_17

Target Alias Description ECC score Gene Family Method Actions
Seita.9G425800.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Solyc01g100790 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.06 Orthogroups_2024-Update
Sopen01g044290 No alias PPR repeat 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000075 cell cycle checkpoint IEP Predicted GO
BP GO:0000077 DNA damage checkpoint IEP Predicted GO
BP GO:0006284 base-excision repair IEP Predicted GO
BP GO:0006974 cellular response to DNA damage stimulus IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
BP GO:0031570 DNA integrity checkpoint IEP Predicted GO
BP GO:0033554 cellular response to stress IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
BP GO:0045786 negative regulation of cell cycle IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
BP GO:0051716 cellular response to stimulus IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 364 411
IPR002885 Pentatricopeptide_repeat 333 361
IPR002885 Pentatricopeptide_repeat 207 227
IPR002885 Pentatricopeptide_repeat 440 466
IPR002885 Pentatricopeptide_repeat 469 498
IPR002885 Pentatricopeptide_repeat 173 201
IPR002885 Pentatricopeptide_repeat 235 264
IPR002885 Pentatricopeptide_repeat 541 566
IPR002885 Pentatricopeptide_repeat 504 532
No external refs found!