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  5. Sobic.001G401500.2

Sobic.001G401500.2


Description : Unknown function


Gene families : OG_42_0003906 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003906_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.001G401500.2
Cluster HCAA Clusters: Cluster_163

Target Alias Description ECC score Gene Family Method Actions
Kfl00115_0050 kfl00115_0050_v1.1 (at4g02220 : 173.0) zinc finger (MYND type) family... 0.03 Orthogroups_2024-Update
Seita.9G435400.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc08g076440 No alias Programmed cell death protein 2 (AHRD V3.3 *** A0A0B0NZT2_GOSAR) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0005737 cytoplasm IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003724 RNA helicase activity IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005643 nuclear pore IEP Predicted GO
CC GO:0005732 small nucleolar ribonucleoprotein complex IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006534 cysteine metabolic process IEP Predicted GO
BP GO:0006790 sulfur compound metabolic process IEP Predicted GO
BP GO:0009069 serine family amino acid metabolic process IEP Predicted GO
BP GO:0009092 homoserine metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
BP GO:0019346 transsulfuration IEP Predicted GO
MF GO:0030599 pectinesterase activity IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
CC GO:0034457 Mpp10 complex IEP Predicted GO
BP GO:0042545 cell wall modification IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044452 nucleolar part IEP Predicted GO
BP GO:0045229 external encapsulating structure organization IEP Predicted GO
BP GO:0050667 homocysteine metabolic process IEP Predicted GO
BP GO:0071555 cell wall organization IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR007320 PDCD2_C 305 407
IPR002893 Znf_MYND 189 227
No external refs found!