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  5. Sobic.001G402050.1

Sobic.001G402050.1


Description : component *(eS28) of small ribosomal-subunit (SSU) proteome


Gene families : OG_42_0002582 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002582_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.001G402050.1
Cluster HCAA Clusters: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
At3g10090 No alias 40S ribosomal protein S28-1... 0.03 Orthogroups_2024-Update
At5g03850 No alias 40S ribosomal protein S28-1... 0.08 Orthogroups_2024-Update
At5g64140 No alias RPS28 [Source:UniProtKB/TrEMBL;Acc:A0A178UA91] 0.09 Orthogroups_2024-Update
Bradi3g00500 No alias Nucleic acid-binding, OB-fold-like protein 0.12 Orthogroups_2024-Update
Bradi4g13890 No alias Nucleic acid-binding, OB-fold-like protein 0.07 Orthogroups_2024-Update
Bradi4g13910 No alias Nucleic acid-binding, OB-fold-like protein 0.05 Orthogroups_2024-Update
Brara.B00115.1 No alias component *(eS28) of small ribosomal-subunit (SSU) proteome 0.06 Orthogroups_2024-Update
Brara.C00134.1 No alias component *(eS28) of small ribosomal-subunit (SSU) proteome 0.27 Orthogroups_2024-Update
Brara.F02295.1 No alias component *(eS28) of small ribosomal-subunit (SSU) proteome 0.18 Orthogroups_2024-Update
Cre12.g510450 No alias Nucleic acid-binding, OB-fold-like protein 0.2 Orthogroups_2024-Update
GRMZM2G124143 No alias Nucleic acid-binding, OB-fold-like protein 0.12 Orthogroups_2024-Update
GRMZM2G455828 No alias Nucleic acid-binding, OB-fold-like protein 0.15 Orthogroups_2024-Update
HORVU3Hr1G115820.3 No alias component *(eS28) of small ribosomal-subunit (SSU) proteome 0.1 Orthogroups_2024-Update
Kfl00237_0050 kfl00237_0050_v1.1 no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
Mp3g15160.1 No alias component RPS28 of SSU proteome 0.05 Orthogroups_2024-Update
Potri.008G013200 No alias ribosomal protein S28 0.15 Orthogroups_2024-Update
Potri.010G245400 No alias ribosomal protein S28 0.04 Orthogroups_2024-Update
Pp1s21_362V6 No alias 40s ribosomal protein s28 0.26 Orthogroups_2024-Update
Pp1s279_27V6 No alias 40s ribosomal protein s28 0.18 Orthogroups_2024-Update
Pp1s313_15V6 No alias 40s ribosomal protein s28 0.11 Orthogroups_2024-Update
Pp1s34_107V6 No alias 40s ribosomal protein s28 0.11 Orthogroups_2024-Update
Solyc02g021400 No alias 40S ribosomal protein S28 (AHRD V3.3 *-* W9SEX7_9ROSA) 0.14 Orthogroups_2024-Update
Solyc10g078630 No alias 40S ribosomal protein S28 (AHRD V3.3 *-* W9SEX7_9ROSA) 0.14 Orthogroups_2024-Update
evm.model.tig00000194.27 No alias (p46302|rs28_maize : 101.0) 40S ribosomal protein S28 -... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA 16Dec
CC GO:0005840 ribosome IEA 16Dec
BP GO:0006412 translation IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0004332 fructose-bisphosphate aldolase activity IEP Predicted GO
CC GO:0005643 nuclear pore IEP Predicted GO
CC GO:0005783 endoplasmic reticulum IEP Predicted GO
BP GO:0006913 nucleocytoplasmic transport IEP Predicted GO
CC GO:0015934 large ribosomal subunit IEP Predicted GO
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP Predicted GO
MF GO:0016832 aldehyde-lyase activity IEP Predicted GO
MF GO:0017056 structural constituent of nuclear pore IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
MF GO:0030515 snoRNA binding IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
CC GO:0044391 ribosomal subunit IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
BP GO:0051169 nuclear transport IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
InterPro domains Description Start Stop
IPR000289 Ribosomal_S28e 40 100
No external refs found!