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  5. Sobic.001G418000.2

Sobic.001G418000.2


Description : UDP-L-rhamnose synthase *(RHM)


Gene families : OG_42_0000886 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000886_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Sorghum bicolor: Sobic.001G418000.2
Cluster HCAA Clusters: Cluster_221

Target Alias Description ECC score Gene Family Method Actions
Glyma.08G148100 No alias rhamnose biosynthesis 1 0.03 Orthogroups_2024-Update
PSME_00056062-RA No alias (at1g78570 : 1136.0) Encodes a UDP-L-Rhamnose synthase... 0.03 Orthogroups_2024-Update
Seita.1G026500.1 No alias UDP-L-rhamnose synthase *(RHM) 0.06 Orthogroups_2024-Update
Seita.9G451100.1 No alias UDP-L-rhamnose synthase *(RHM) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003849 3-deoxy-7-phosphoheptulonate synthase activity IEP Predicted GO
MF GO:0004427 inorganic diphosphatase activity IEP Predicted GO
BP GO:0006520 cellular amino acid metabolic process IEP Predicted GO
BP GO:0008652 cellular amino acid biosynthetic process IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009072 aromatic amino acid family metabolic process IEP Predicted GO
BP GO:0009073 aromatic amino acid family biosynthetic process IEP Predicted GO
MF GO:0009678 hydrogen-translocating pyrophosphatase activity IEP Predicted GO
MF GO:0015399 primary active transmembrane transporter activity IEP Predicted GO
MF GO:0015405 P-P-bond-hydrolysis-driven transmembrane transporter activity IEP Predicted GO
BP GO:0016053 organic acid biosynthetic process IEP Predicted GO
BP GO:0016226 iron-sulfur cluster assembly IEP Predicted GO
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Predicted GO
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Predicted GO
MF GO:0019842 vitamin binding IEP Predicted GO
MF GO:0030170 pyridoxal phosphate binding IEP Predicted GO
BP GO:0031163 metallo-sulfur cluster assembly IEP Predicted GO
BP GO:0044283 small molecule biosynthetic process IEP Predicted GO
BP GO:0046394 carboxylic acid biosynthetic process IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
MF GO:0050662 coenzyme binding IEP Predicted GO
MF GO:0051287 NAD binding IEP Predicted GO
MF GO:0070279 vitamin B6 binding IEP Predicted GO
MF GO:0070403 NAD+ binding IEP Predicted GO
InterPro domains Description Start Stop
IPR029903 RmlD-like-bd 386 557
IPR016040 NAD(P)-bd_dom 10 315
No external refs found!