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  5. Sobic.001G420200.1

Sobic.001G420200.1


Description : component *(U1-70K) of U1 snRNP complex


Gene families : OG_42_0004628 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004628_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.001G420200.1
Cluster HCAA Clusters: Cluster_151

Target Alias Description ECC score Gene Family Method Actions
Bradi3g30430 No alias U1 small nuclear ribonucleoprotein-70K 0.03 Orthogroups_2024-Update
Potri.005G124300 No alias U1 small nuclear ribonucleoprotein-70K 0.02 Orthogroups_2024-Update
Pp1s332_45V6 No alias u1 snrnp 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0004519 endonuclease activity IEP Predicted GO
MF GO:0004521 endoribonuclease activity IEP Predicted GO
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP Predicted GO
MF GO:0004540 ribonuclease activity IEP Predicted GO
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Predicted GO
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Predicted GO
InterPro domains Description Start Stop
IPR022023 U1snRNP70_N 41 129
IPR000504 RRM_dom 140 209
No external refs found!