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  5. Sobic.001G420400.1

Sobic.001G420400.1


Description : asparagine-tRNA ligase & EC_6.1 ligase forming carbon-oxygen bond


Gene families : OG_42_0001608 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001608_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.001G420400.1
Cluster HCAA Clusters: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
PSME_00002205-RA No alias (at5g56680 : 768.0) Encodes a putative cytosolic... 0.03 Orthogroups_2024-Update
PSME_00027565-RA No alias (at4g17300 : 564.0) Asparaginyl-tRNA synthetase protein... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEA 16Dec
MF GO:0003676 nucleic acid binding IEA 16Dec
MF GO:0004812 aminoacyl-tRNA ligase activity IEA 16Dec
MF GO:0005524 ATP binding IEA 16Dec
BP GO:0006418 tRNA aminoacylation for protein translation IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0005543 phospholipid binding IEP Predicted GO
MF GO:0015078 proton transmembrane transporter activity IEP Predicted GO
MF GO:0015291 secondary active transmembrane transporter activity IEP Predicted GO
MF GO:0015297 antiporter activity IEP Predicted GO
MF GO:0015298 solute:cation antiporter activity IEP Predicted GO
MF GO:0015299 solute:proton antiporter activity IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
InterPro domains Description Start Stop
IPR004364 aa-tRNA-synt_II 143 204
IPR004364 aa-tRNA-synt_II 292 554
IPR004365 NA-bd_OB_tRNA 43 119
No external refs found!