Sobic.001G430900.1

Description : component *(eL40) of large ribosomal-subunit (LSU) proteome

Gene families : OG_42_0000048 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000048_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor: Sobic.001G430900.1
Cluster	HCAA Clusters: Cluster_68

Target	Alias	Description	ECC score	Gene Family Method
HORVU3Hr1G110970.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
HORVU6Hr1G014970.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
HORVU7Hr1G029070.1	No alias	RUB ubiquitin-fold protein	0.03	Orthogroups_2024-Update
LOC_Os09g27930	No alias	ubiquitin fusion protein, putative, expressed	0.04	Orthogroups_2024-Update
LOC_Os09g31019	No alias	ubiquitin fusion protein, putative, expressed	0.03	Orthogroups_2024-Update
Mp3g22950.1	No alias	ubiquitin-fold protein (UBQ)	0.02	Orthogroups_2024-Update
Potri.011G134200	No alias	polyubiquitin 10	0.02	Orthogroups_2024-Update
Potri.017G036800	No alias	polyubiquitin 10	0.03	Orthogroups_2024-Update
Seita.7G247300.1	No alias	UBQ ubiquitin-fold protein	0.04	Orthogroups_2024-Update
Sobic.003G403700.1	No alias	UBQ ubiquitin-fold protein	0.02	Orthogroups_2024-Update
Sobic.010G223600.1	No alias	UBQ ubiquitin-fold protein	0.03	Orthogroups_2024-Update
Sobic.010G232100.1	No alias	UBQ ubiquitin-fold protein	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	16Dec
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	16Dec
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	16Dec
BP	GO:0006412	translation	IEA	16Dec
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006633	fatty acid biosynthetic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001975	Ribosomal_L40e	84	131
IPR000626	Ubiquitin_dom	4	71

External Links

No external refs found!

Sobic.001G430900.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation