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  5. Sobic.001G437000.1

Sobic.001G437000.1


Description : Unknown function


Gene families : OG_42_0000251 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000251_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.001G437000.1
Cluster HCAA Clusters: Cluster_193

Target Alias Description ECC score Gene Family Method Actions
GRMZM2G090842 No alias ACT domain repeat 8 0.02 Orthogroups_2024-Update
HORVU5Hr1G047640.1 No alias Unknown function 0.04 Orthogroups_2024-Update
PSME_00006457-RA No alias (at1g69040 : 315.0) ACT-domain containing protein... 0.02 Orthogroups_2024-Update
PSME_00036187-RA No alias (at1g69040 : 560.0) ACT-domain containing protein... 0.02 Orthogroups_2024-Update
PSME_00043084-RA No alias (at2g03730 : 112.0) Member of a small family of ACT... 0.03 Orthogroups_2024-Update
Seita.7G076400.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.9G365800.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Solyc02g094300 No alias ACT domain-containing protein (AHRD V3.3 *-* A0A103Y4L4_CYNCS) 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004568 chitinase activity IEP Predicted GO
MF GO:0005509 calcium ion binding IEP Predicted GO
BP GO:0006022 aminoglycan metabolic process IEP Predicted GO
BP GO:0006026 aminoglycan catabolic process IEP Predicted GO
BP GO:0006030 chitin metabolic process IEP Predicted GO
BP GO:0006032 chitin catabolic process IEP Predicted GO
BP GO:0006040 amino sugar metabolic process IEP Predicted GO
MF GO:0008061 chitin binding IEP Predicted GO
BP GO:0016998 cell wall macromolecule catabolic process IEP Predicted GO
BP GO:0042737 drug catabolic process IEP Predicted GO
BP GO:0044036 cell wall macromolecule metabolic process IEP Predicted GO
BP GO:0046348 amino sugar catabolic process IEP Predicted GO
BP GO:1901071 glucosamine-containing compound metabolic process IEP Predicted GO
BP GO:1901072 glucosamine-containing compound catabolic process IEP Predicted GO
BP GO:1901136 carbohydrate derivative catabolic process IEP Predicted GO
BP GO:1901565 organonitrogen compound catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR002912 ACT_dom 332 383
No external refs found!