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  5. Sobic.001G441100.1

Sobic.001G441100.1


Description : E3 ubiquitin ligase


Gene families : OG_42_0000112 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000112_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.001G441100.1

Target Alias Description ECC score Gene Family Method Actions
416356 No alias plant U-box 24 0.07 Orthogroups_2024-Update
426053 No alias plant U-box 24 0.06 Orthogroups_2024-Update
A4A49_22370 No alias u-box domain-containing protein 26 0.04 Orthogroups_2024-Update
A4A49_33780 No alias e3 ubiquitin-protein ligase pub23 0.07 Orthogroups_2024-Update
At1g49780 No alias U-box domain-containing protein 26... 0.03 Orthogroups_2024-Update
At1g66160 No alias U-box domain-containing protein 20... 0.06 Orthogroups_2024-Update
Bradi1g68530 No alias ARM repeat superfamily protein 0.02 Orthogroups_2024-Update
Bradi5g27660 No alias CYS, MET, PRO, and GLY protein 2 0.02 Orthogroups_2024-Update
Brara.B01640.1 No alias E3 ubiquitin ligase 0.05 Orthogroups_2024-Update
Brara.D00589.1 No alias E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.D01194.1 No alias E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
GRMZM2G055052 No alias CYS, MET, PRO, and GLY protein 1 0.08 Orthogroups_2024-Update
GRMZM2G071484 No alias plant U-box 22 0.04 Orthogroups_2024-Update
GRMZM2G168980 No alias plant U-box 23 0.03 Orthogroups_2024-Update
GRMZM5G855994 No alias ARM repeat superfamily protein 0.06 Orthogroups_2024-Update
Glyma.02G102900 No alias plant U-box 26 0.03 Orthogroups_2024-Update
Glyma.02G242900 No alias CYS, MET, PRO, and GLY protein 1 0.04 Orthogroups_2024-Update
Glyma.07G106000 No alias ARM repeat superfamily protein 0.04 Orthogroups_2024-Update
HORVU2Hr1G076470.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU6Hr1G077120.1 No alias E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Kfl00376_0010 kfl00376_0010_v1.... (at2g28830 : 87.8) PLANT U-BOX 12 (PUB12); FUNCTIONS IN:... 0.02 Orthogroups_2024-Update
LOC_Os02g33590 No alias U-box domain-containing protein, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os02g34410 No alias U-box domain-containing protein, putative, expressed 0.02 Orthogroups_2024-Update
MA_33190g0010 No alias (at2g35930 : 324.0) Encodes a cytoplasmically localized... 0.04 Orthogroups_2024-Update
MA_410546g0010 No alias (at2g35930 : 239.0) Encodes a cytoplasmically localized... 0.03 Orthogroups_2024-Update
MA_415393g0010 No alias (at3g19380 : 146.0) plant U-box 25 (PUB25); FUNCTIONS... 0.06 Orthogroups_2024-Update
MA_6335g0010 No alias "(at5g64660 : 281.0) ""CYS, MET, PRO, and GLY protein... 0.04 Orthogroups_2024-Update
MA_8030489g0010 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
PSME_00022617-RA No alias (at3g52450 : 247.0) Encodes a cytoplasmically localized... 0.04 Orthogroups_2024-Update
PSME_00026834-RA No alias (at3g19380 : 258.0) plant U-box 25 (PUB25); FUNCTIONS... 0.03 Orthogroups_2024-Update
PSME_00043995-RA No alias (at1g49780 : 227.0) plant U-box 26 (PUB26); FUNCTIONS... 0.05 Orthogroups_2024-Update
PSME_00048709-RA No alias (at2g35930 : 183.0) Encodes a cytoplasmically localized... 0.04 Orthogroups_2024-Update
PSME_00049378-RA No alias (at3g19380 : 185.0) plant U-box 25 (PUB25); FUNCTIONS... 0.04 Orthogroups_2024-Update
PSME_00056516-RA No alias (at3g19380 : 420.0) plant U-box 25 (PUB25); FUNCTIONS... 0.04 Orthogroups_2024-Update
PSME_00056761-RA No alias (at3g19380 : 247.0) plant U-box 25 (PUB25); FUNCTIONS... 0.03 Orthogroups_2024-Update
Potri.002G070500 No alias plant U-box 29 0.04 Orthogroups_2024-Update
Potri.005G189800 No alias plant U-box 29 0.03 Orthogroups_2024-Update
Potri.007G110600 No alias ARM repeat superfamily protein 0.05 Orthogroups_2024-Update
Potri.009G016100 No alias plant U-box 24 0.04 Orthogroups_2024-Update
Potri.016G069500 No alias plant U-box 24 0.02 Orthogroups_2024-Update
Potri.017G135000 No alias ARM repeat superfamily protein 0.05 Orthogroups_2024-Update
Seita.7G095100.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.9G474100.1 No alias E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
Sobic.001G272900.1 No alias Unknown function 0.06 Orthogroups_2024-Update
Solyc01g005160 No alias Avr9/Cf-9 rapidly elicited protein 1 0.04 Orthogroups_2024-Update
Solyc01g009330 No alias U-box domain-containing family protein (AHRD V3.3 ***... 0.02 Orthogroups_2024-Update
Solyc01g107980 No alias U-box domain-containing family protein (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update
Solyc04g008100 No alias U-box domain-containing protein (AHRD V3.3 *** A0A0A0RAL4_9ROSI) 0.06 Orthogroups_2024-Update
Solyc04g071030 No alias U-box domain-containing family protein (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update
Solyc06g074140 No alias LOW QUALITY:U-box domain-containing family protein (AHRD... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA 16Dec
BP GO:0016567 protein ubiquitination IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0009719 response to endogenous stimulus IEP Predicted GO
BP GO:0009725 response to hormone IEP Predicted GO
BP GO:0009733 response to auxin IEP Predicted GO
BP GO:0010033 response to organic substance IEP Predicted GO
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Predicted GO
BP GO:0042221 response to chemical IEP Predicted GO
MF GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR003613 Ubox_domain 34 105
No external refs found!