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  5. Sobic.001G473000.1

Sobic.001G473000.1


Description : Unknown function


Gene families : OG_42_0000210 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000210_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.001G473000.1
Cluster HCAA Clusters: Cluster_110

Target Alias Description ECC score Gene Family Method Actions
At1g32490 No alias ESP3 [Source:UniProtKB/TrEMBL;Acc:A0A178W3A5] 0.02 Orthogroups_2024-Update
At3g26560 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.03 Orthogroups_2024-Update
Bradi1g61220 No alias RNA helicase family protein 0.04 Orthogroups_2024-Update
Bradi4g19990 No alias RNA helicase family protein 0.02 Orthogroups_2024-Update
Brara.K01116.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Glyma.13G342400 No alias RNA helicase family protein 0.03 Orthogroups_2024-Update
Glyma.14G217400 No alias RNA helicase family protein 0.03 Orthogroups_2024-Update
Glyma.17G256200 No alias ATP-dependent RNA helicase, putative 0.09 Orthogroups_2024-Update
Kfl00433_0080 kfl00433_0080_v1.1 (at1g33390 : 423.0) Over-expression of this gene results... 0.02 Orthogroups_2024-Update
MA_629782g0010 No alias (at5g13010 : 617.0) embryo defective 3011 (EMB3011);... 0.03 Orthogroups_2024-Update
PSME_00007417-RA No alias (at1g33390 : 609.0) Over-expression of this gene results... 0.02 Orthogroups_2024-Update
Potri.015G008700 No alias RNA helicase family protein 0.03 Orthogroups_2024-Update
Seita.1G136100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.2G326100.1 No alias RNA helicase *(Prp16) 0.03 Orthogroups_2024-Update
Solyc03g115390 No alias RNA helicase DEAH-box10 0.04 Orthogroups_2024-Update
evm.model.contig_594.3 No alias (at1g32490 : 556.0) Encodes a homolog of the yeast PRP2... 0.02 Orthogroups_2024-Update
evm.model.tig00000842.2 No alias (at3g26560 : 568.0) ATP-dependent RNA helicase,... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA 16Dec
MF GO:0004386 helicase activity IEA 16Dec
MF GO:0005524 ATP binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP Predicted GO
MF GO:0004402 histone acetyltransferase activity IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
BP GO:0006325 chromatin organization IEP Predicted GO
BP GO:0006338 chromatin remodeling IEP Predicted GO
BP GO:0006352 DNA-templated transcription, initiation IEP Predicted GO
BP GO:0006397 mRNA processing IEP Predicted GO
BP GO:0006473 protein acetylation IEP Predicted GO
BP GO:0006475 internal protein amino acid acetylation IEP Predicted GO
BP GO:0006479 protein methylation IEP Predicted GO
MF GO:0008080 N-acetyltransferase activity IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
MF GO:0008170 N-methyltransferase activity IEP Predicted GO
BP GO:0008213 protein alkylation IEP Predicted GO
MF GO:0008276 protein methyltransferase activity IEP Predicted GO
BP GO:0016043 cellular component organization IEP Predicted GO
MF GO:0016278 lysine N-methyltransferase activity IEP Predicted GO
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Predicted GO
MF GO:0016407 acetyltransferase activity IEP Predicted GO
MF GO:0016410 N-acyltransferase activity IEP Predicted GO
BP GO:0016569 covalent chromatin modification IEP Predicted GO
BP GO:0016570 histone modification IEP Predicted GO
BP GO:0016571 histone methylation IEP Predicted GO
BP GO:0016573 histone acetylation IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
BP GO:0018022 peptidyl-lysine methylation IEP Predicted GO
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Predicted GO
BP GO:0018193 peptidyl-amino acid modification IEP Predicted GO
BP GO:0018205 peptidyl-lysine modification IEP Predicted GO
BP GO:0018393 internal peptidyl-lysine acetylation IEP Predicted GO
BP GO:0018394 peptidyl-lysine acetylation IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
MF GO:0034212 peptide N-acetyltransferase activity IEP Predicted GO
BP GO:0034968 histone lysine methylation IEP Predicted GO
MF GO:0042054 histone methyltransferase activity IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0043414 macromolecule methylation IEP Predicted GO
BP GO:0043543 protein acylation IEP Predicted GO
MF GO:0051020 GTPase binding IEP Predicted GO
BP GO:0051276 chromosome organization IEP Predicted GO
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
InterPro domains Description Start Stop
IPR011709 DUF1605 1127 1202
IPR007502 Helicase-assoc_dom 981 1069
IPR011545 DEAD/DEAH_box_helicase_dom 595 745
IPR001650 Helicase_C 787 919
IPR003029 S1_domain 283 355
No external refs found!