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  5. Sobic.001G475500.1

Sobic.001G475500.1


Description : A-class RAB GTPase


Gene families : OG_42_0000131 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000131_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.001G475500.1
Cluster HCAA Clusters: Cluster_240

Target Alias Description ECC score Gene Family Method Actions
At1g06400 No alias Ras-related protein RABA1a... 0.02 Orthogroups_2024-Update
Glyma.12G212400 No alias Ras-related small GTP-binding family protein 0.03 Orthogroups_2024-Update
Glyma.16G001800 No alias RAB GTPase 11C 0.03 Orthogroups_2024-Update
Solyc03g079900 No alias Ras-related protein, expressed (AHRD V3.3 *** D8L9F8_WHEAT) 0.03 Orthogroups_2024-Update
Sopen00g014180 No alias Ras family 0.03 Orthogroups_2024-Update
Sopen02g021160 No alias Ras family 0.03 Orthogroups_2024-Update
evm.model.tig00020961.97 No alias (q39572|yptc6_chlre : 290.0) Ras-related protein YPTC6 -... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA 16Dec
MF GO:0005525 GTP binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEP Predicted GO
BP GO:0016567 protein ubiquitination IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0019787 ubiquitin-like protein transferase activity IEP Predicted GO
BP GO:0032446 protein modification by small protein conjugation IEP Predicted GO
BP GO:0070647 protein modification by small protein conjugation or removal IEP Predicted GO
InterPro domains Description Start Stop
IPR001806 Small_GTPase 13 173
No external refs found!