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  5. Sobic.001G482700.1

Sobic.001G482700.1


Description : TIFY-type transcription factor


Gene families : OG_42_0000349 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000349_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.001G482700.1
Cluster HCAA Clusters: Cluster_249

Target Alias Description ECC score Gene Family Method Actions
A4A49_10090 No alias protein tify 10a 0.02 Orthogroups_2024-Update
AC197764.4_FG003 No alias TIFY domain/Divergent CCT motif family protein 0.03 Orthogroups_2024-Update
Bradi3g23220 No alias jasmonate-zim-domain protein 1 0.03 Orthogroups_2024-Update
Brara.G03130.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.K00975.1 No alias component *(JAZ) of jasmonic acid receptor complex &... 0.04 Orthogroups_2024-Update
GRMZM2G145412 No alias jasmonate-zim-domain protein 11 0.02 Orthogroups_2024-Update
GRMZM2G145458 No alias jasmonate-zim-domain protein 11 0.05 Orthogroups_2024-Update
GRMZM5G838098 No alias jasmonate-zim-domain protein 1 0.07 Orthogroups_2024-Update
Glyma.08G264701 No alias jasmonate-zim-domain protein 1 0.03 Orthogroups_2024-Update
HORVU4Hr1G076840.5 No alias component *(JAZ) of jasmonic acid receptor complex &... 0.03 Orthogroups_2024-Update
HORVU5Hr1G062290.6 No alias TIFY-type transcription factor 0.03 Orthogroups_2024-Update
LOC_Os03g08330 No alias ZIM domain containing protein, putative, expressed 0.04 Orthogroups_2024-Update
LOC_Os09g26780 No alias zinc-finger protein, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os10g25230 No alias ZIM domain containing protein, putative, expressed 0.04 Orthogroups_2024-Update
MA_10426545g0010 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
MA_10426545g0020 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
MA_10427283g0030 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
MA_19887g0010 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
MA_470613g0010 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
PSME_00014976-RA No alias no hits & (original description: no original description) 0.05 Orthogroups_2024-Update
PSME_00024545-RA No alias no hits & (original description: no original description) 0.05 Orthogroups_2024-Update
PSME_00046059-RA No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
Seita.2G388400.1 No alias component *(JAZ) of jasmonic acid receptor complex &... 0.04 Orthogroups_2024-Update
Seita.9G251600.1 No alias TIFY-type transcription factor 0.04 Orthogroups_2024-Update
Seita.9G252500.1 No alias component *(JAZ) of jasmonic acid receptor complex &... 0.04 Orthogroups_2024-Update
Seita.9G371000.1 No alias component *(JAZ) of jasmonic acid receptor complex &... 0.04 Orthogroups_2024-Update
Seita.9G517900.1 No alias TIFY-type transcription factor 0.05 Orthogroups_2024-Update
Seita.9G518000.1 No alias TIFY-type transcription factor 0.06 Orthogroups_2024-Update
Seita.9G518100.1 No alias TIFY-type transcription factor 0.05 Orthogroups_2024-Update
Sobic.001G482600.1 No alias TIFY-type transcription factor 0.05 Orthogroups_2024-Update
Solyc12g009220 No alias jasmonate ZIM-domain protein 1 0.04 Orthogroups_2024-Update
Sopen12g004170 No alias tify domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0001871 pattern binding IEP Predicted GO
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0005509 calcium ion binding IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
MF GO:0009055 electron transfer activity IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
MF GO:0030246 carbohydrate binding IEP Predicted GO
MF GO:0030247 polysaccharide binding IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
MF GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR010399 Tify_dom 92 123
IPR018467 CCT_CS 145 169
No external refs found!