Sobic.001G487200.1

Description : RING-H2-class CTL-subclass E3 ubiquitin ligase & E3 ubiquitin ligase *(EOD1)

Gene families : OG_42_0000917 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000917_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor: Sobic.001G487200.1
Cluster	HCAA Clusters: Cluster_3

Target	Alias	Description	ECC score	Gene Family Method
Bradi3g42410	No alias	RING/U-box superfamily protein	0.03	Orthogroups_2024-Update
Cre10.g442750	No alias	RING/U-box superfamily protein	0.01	Orthogroups_2024-Update
LOC_Os04g48260	No alias	zinc RING finger protein, putative, expressed	0.02	Orthogroups_2024-Update
PSME_00018924-RA	No alias	(at3g19910 : 173.0) RING/U-box superfamily protein;...	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
No GO annotation available for this sequence

Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEP	Predicted GO
MF	GO:0003824	catalytic activity	IEP	Predicted GO
MF	GO:0004470	malic enzyme activity	IEP	Predicted GO
MF	GO:0004471	malate dehydrogenase (decarboxylating) (NAD+) activity	IEP	Predicted GO
MF	GO:0005507	copper ion binding	IEP	Predicted GO
MF	GO:0008081	phosphoric diester hydrolase activity	IEP	Predicted GO
BP	GO:0009451	RNA modification	IEP	Predicted GO
MF	GO:0009982	pseudouridine synthase activity	IEP	Predicted GO
MF	GO:0016615	malate dehydrogenase activity	IEP	Predicted GO
MF	GO:0016787	hydrolase activity	IEP	Predicted GO
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	Predicted GO
MF	GO:0016866	intramolecular transferase activity	IEP	Predicted GO
MF	GO:0042578	phosphoric ester hydrolase activity	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001841	Znf_RING	196	237

External Links

No external refs found!