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  5. Sobic.001G490800.1

Sobic.001G490800.1


Description : pectin methylesterase


Gene families : OG_42_0000087 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000087_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.001G490800.1
Cluster HCAA Clusters: Cluster_89

Target Alias Description ECC score Gene Family Method Actions
165098 No alias Pectin lyase-like superfamily protein 0.04 Orthogroups_2024-Update
431592 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.03 Orthogroups_2024-Update
At5g07420 No alias Probable pectinesterase 49... 0.03 Orthogroups_2024-Update
Brara.J01617.1 No alias pectin methylesterase 0.02 Orthogroups_2024-Update
LOC_Os08g12410 No alias pectinesterase, putative, expressed 0.02 Orthogroups_2024-Update
Seita.3G333900.1 No alias pectin methylesterase 0.04 Orthogroups_2024-Update
Seita.9G525400.1 No alias pectin methylesterase 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0030599 pectinesterase activity IEA 16Dec
BP GO:0042545 cell wall modification IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEP Predicted GO
MF GO:0004672 protein kinase activity IEP Predicted GO
BP GO:0006275 regulation of DNA replication IEP Predicted GO
BP GO:0006468 protein phosphorylation IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
BP GO:0016310 phosphorylation IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
BP GO:0051052 regulation of DNA metabolic process IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
MF GO:0140096 catalytic activity, acting on a protein IEP Predicted GO
InterPro domains Description Start Stop
IPR000070 Pectinesterase_cat 5 203
IPR000070 Pectinesterase_cat 207 275
No external refs found!