1. Home
  2. Species
  3. Sorghum bicolor
  4. Sequence
  5. Sobic.001G493001.1

Sobic.001G493001.1


Description : component *(eS28) of small ribosomal-subunit (SSU) proteome


Gene families : OG_42_0002582 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002582_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.001G493001.1
Cluster HCAA Clusters: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
170205 No alias Nucleic acid-binding, OB-fold-like protein 0.1 Orthogroups_2024-Update
At3g10090 No alias 40S ribosomal protein S28-1... 0.04 Orthogroups_2024-Update
At5g03850 No alias 40S ribosomal protein S28-1... 0.07 Orthogroups_2024-Update
At5g64140 No alias RPS28 [Source:UniProtKB/TrEMBL;Acc:A0A178UA91] 0.05 Orthogroups_2024-Update
Bradi3g00500 No alias Nucleic acid-binding, OB-fold-like protein 0.16 Orthogroups_2024-Update
Bradi4g13890 No alias Nucleic acid-binding, OB-fold-like protein 0.12 Orthogroups_2024-Update
Bradi4g13910 No alias Nucleic acid-binding, OB-fold-like protein 0.06 Orthogroups_2024-Update
Brara.B00115.1 No alias component *(eS28) of small ribosomal-subunit (SSU) proteome 0.12 Orthogroups_2024-Update
Brara.C00134.1 No alias component *(eS28) of small ribosomal-subunit (SSU) proteome 0.24 Orthogroups_2024-Update
Brara.F02295.1 No alias component *(eS28) of small ribosomal-subunit (SSU) proteome 0.2 Orthogroups_2024-Update
Cre12.g510450 No alias Nucleic acid-binding, OB-fold-like protein 0.19 Orthogroups_2024-Update
GRMZM2G124143 No alias Nucleic acid-binding, OB-fold-like protein 0.16 Orthogroups_2024-Update
GRMZM2G455828 No alias Nucleic acid-binding, OB-fold-like protein 0.19 Orthogroups_2024-Update
Glyma.03G205800 No alias Nucleic acid-binding, OB-fold-like protein 0.03 Orthogroups_2024-Update
HORVU3Hr1G115820.3 No alias component *(eS28) of small ribosomal-subunit (SSU) proteome 0.12 Orthogroups_2024-Update
Kfl00237_0050 kfl00237_0050_v1.1 no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
LOC_Os10g27174 No alias 40S ribosomal protein S28, putative, expressed 0.03 Orthogroups_2024-Update
Mp3g15160.1 No alias component RPS28 of SSU proteome 0.09 Orthogroups_2024-Update
PSME_00016821-RA No alias (p46302|rs28_maize : 97.4) 40S ribosomal protein S28 -... 0.05 Orthogroups_2024-Update
Potri.008G013200 No alias ribosomal protein S28 0.13 Orthogroups_2024-Update
Potri.010G245400 No alias ribosomal protein S28 0.03 Orthogroups_2024-Update
Potri.016G063100 No alias ribosomal protein S28 0.03 Orthogroups_2024-Update
Pp1s21_362V6 No alias 40s ribosomal protein s28 0.37 Orthogroups_2024-Update
Pp1s279_27V6 No alias 40s ribosomal protein s28 0.24 Orthogroups_2024-Update
Pp1s313_15V6 No alias 40s ribosomal protein s28 0.14 Orthogroups_2024-Update
Pp1s34_107V6 No alias 40s ribosomal protein s28 0.19 Orthogroups_2024-Update
Solyc02g021400 No alias 40S ribosomal protein S28 (AHRD V3.3 *-* W9SEX7_9ROSA) 0.15 Orthogroups_2024-Update
Solyc10g078630 No alias 40S ribosomal protein S28 (AHRD V3.3 *-* W9SEX7_9ROSA) 0.14 Orthogroups_2024-Update
evm.model.tig00000194.27 No alias (p46302|rs28_maize : 101.0) 40S ribosomal protein S28 -... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA 16Dec
CC GO:0005840 ribosome IEA 16Dec
BP GO:0006412 translation IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0004332 fructose-bisphosphate aldolase activity IEP Predicted GO
CC GO:0005783 endoplasmic reticulum IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
BP GO:0006486 protein glycosylation IEP Predicted GO
BP GO:0006487 protein N-linked glycosylation IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
CC GO:0008250 oligosaccharyltransferase complex IEP Predicted GO
CC GO:0015934 large ribosomal subunit IEP Predicted GO
MF GO:0016832 aldehyde-lyase activity IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
BP GO:0043413 macromolecule glycosylation IEP Predicted GO
CC GO:0044391 ribosomal subunit IEP Predicted GO
BP GO:0070085 glycosylation IEP Predicted GO
InterPro domains Description Start Stop
IPR000289 Ribosomal_S28e 76 136
No external refs found!