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  5. Sobic.001G501100.1

Sobic.001G501100.1


Description : Unknown function


Gene families : OG_42_0001854 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001854_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.001G501100.1
Cluster HCAA Clusters: Cluster_62

Target Alias Description ECC score Gene Family Method Actions
A4A49_34498 No alias heavy metal-associated isoprenylated plant protein 3 0.04 Orthogroups_2024-Update
At2g28090 No alias Heavy metal-associated isoprenylated plant protein 1... 0.03 Orthogroups_2024-Update
At2g36950 No alias Heavy metal-associated isoprenylated plant protein 5... 0.03 Orthogroups_2024-Update
At5g60800 No alias Heavy metal transport/detoxification superfamily protein... 0.03 Orthogroups_2024-Update
Bradi3g27550 No alias Heavy metal transport/detoxification superfamily protein 0.03 Orthogroups_2024-Update
Brara.D02246.1 No alias Unknown function 0.03 Orthogroups_2024-Update
GRMZM2G008290 No alias Heavy metal transport/detoxification superfamily protein 0.02 Orthogroups_2024-Update
LOC_Os03g05750 No alias heavy-metal-associated domain-containing protein,... 0.03 Orthogroups_2024-Update
Potri.004G214700 No alias Heavy metal transport/detoxification superfamily protein 0.04 Orthogroups_2024-Update
Seita.9G240300.1 No alias Unknown function 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA 16Dec
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0004601 peroxidase activity IEP Predicted GO
MF GO:0005509 calcium ion binding IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
MF GO:0016209 antioxidant activity IEP Predicted GO
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Predicted GO
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
MF GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR006121 HMA_dom 32 81
IPR006121 HMA_dom 149 206
No external refs found!