1. Home
  2. Species
  3. Sorghum bicolor
  4. Sequence
  5. Sobic.001G501400.1

Sobic.001G501400.1


Description : SSU processome assembly factor *(UTP12)


Gene families : OG_42_0005593 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005593_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.001G501400.1
Cluster HCAA Clusters: Cluster_164

Target Alias Description ECC score Gene Family Method Actions
AC209858.4_FG002 No alias transducin family protein / WD-40 repeat family protein 0.08 Orthogroups_2024-Update
At3g21540 No alias Transducin family protein / WD-40 repeat family protein... 0.07 Orthogroups_2024-Update
Bradi1g74940 No alias transducin family protein / WD-40 repeat family protein 0.1 Orthogroups_2024-Update
Brara.A01985.1 No alias SSU processome assembly factor *(UTP12) 0.08 Orthogroups_2024-Update
Cre10.g438700 No alias transducin family protein / WD-40 repeat family protein 0.05 Orthogroups_2024-Update
Glyma.03G186500 No alias transducin family protein / WD-40 repeat family protein 0.05 Orthogroups_2024-Update
HORVU4Hr1G083410.1 No alias SSU processome assembly factor *(UTP12) 0.07 Orthogroups_2024-Update
Potri.006G121100 No alias transducin family protein / WD-40 repeat family protein 0.05 Orthogroups_2024-Update
Seita.9G537800.1 No alias SSU processome assembly factor *(UTP12) 0.13 Orthogroups_2024-Update
Solyc10g039190 No alias transducin family protein / WD-40 repeat family protein... 0.06 Orthogroups_2024-Update
Sopen10g012250 No alias WD domain, G-beta repeat 0.07 Orthogroups_2024-Update
evm.model.contig_4446.12 No alias (at3g21540 : 426.0) transducin family protein / WD-40... 0.06 Orthogroups_2024-Update
evm.model.tig00021721.26 No alias (at3g21540 : 312.0) transducin family protein / WD-40... 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0004559 alpha-mannosidase activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
BP GO:0006013 mannose metabolic process IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
MF GO:0008134 transcription factor binding IEP Predicted GO
MF GO:0015923 mannosidase activity IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
BP GO:0040008 regulation of growth IEP Predicted GO
CC GO:0044445 cytosolic part IEP Predicted GO
BP GO:0045927 positive regulation of growth IEP Predicted GO
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Predicted GO
CC GO:0090730 Las1 complex IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
CC GO:1902555 endoribonuclease complex IEP Predicted GO
CC GO:1902911 protein kinase complex IEP Predicted GO
CC GO:1905348 endonuclease complex IEP Predicted GO
CC GO:1905354 exoribonuclease complex IEP Predicted GO
InterPro domains Description Start Stop
IPR007148 SSU_processome_Utp12 787 888
IPR001680 WD40_repeat 100 136
IPR001680 WD40_repeat 567 600
IPR001680 WD40_repeat 145 178
IPR001680 WD40_repeat 648 685
IPR001680 WD40_repeat 183 218
IPR001680 WD40_repeat 389 419
IPR001680 WD40_repeat 63 94
No external refs found!