Sobic.001G510800.1

Description : component *(uL14) of large ribosomal-subunit (LSU) proteome

Gene families : OG_42_0001290 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001290_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor: Sobic.001G510800.1
Cluster	HCAA Clusters: Cluster_24

Target	Alias	Description	ECC score	Gene Family Method
165708	No alias	Ribosomal protein L14p/L23e family protein	0.21	Orthogroups_2024-Update
A4A49_26558	No alias	60s ribosomal protein l23	0.07	Orthogroups_2024-Update
Bradi1g75790	No alias	Ribosomal protein L14p/L23e family protein	0.12	Orthogroups_2024-Update
Bradi3g28300	No alias	Ribosomal protein L14p/L23e family protein	0.17	Orthogroups_2024-Update
Bradi3g55140	No alias	Ribosomal protein L14p/L23e family protein	0.22	Orthogroups_2024-Update
Brara.A03771.1	No alias	component *(uL14) of large ribosomal-subunit (LSU) proteome	0.33	Orthogroups_2024-Update
Brara.C03052.1	No alias	component *(uL14) of large ribosomal-subunit (LSU) proteome	0.35	Orthogroups_2024-Update
Brara.E03449.1	No alias	component *(uL14) of large ribosomal-subunit (LSU) proteome	0.25	Orthogroups_2024-Update
Brara.H03046.1	No alias	component *(uL14) of large ribosomal-subunit (LSU) proteome	0.21	Orthogroups_2024-Update
Brara.I05490.1	No alias	component *(uL14) of large ribosomal-subunit (LSU) proteome	0.26	Orthogroups_2024-Update
Brara.J00259.1	No alias	component *(uL14) of large ribosomal-subunit (LSU) proteome	0.23	Orthogroups_2024-Update
Cre04.g211800	No alias	Ribosomal protein L14p/L23e family protein	0.32	Orthogroups_2024-Update
GRMZM2G123495	No alias	Ribosomal protein L14p/L23e family protein	0.09	Orthogroups_2024-Update
GRMZM2G150058	No alias	Ribosomal protein L14p/L23e family protein	0.05	Orthogroups_2024-Update
GRMZM2G171181	No alias	Ribosomal protein L14p/L23e family protein	0.06	Orthogroups_2024-Update
Glyma.03G166700	No alias	Ribosomal protein L14p/L23e family protein	0.03	Orthogroups_2024-Update
Glyma.10G039900	No alias	Ribosomal protein L14p/L23e family protein	0.05	Orthogroups_2024-Update
Glyma.13G126400	No alias	Ribosomal protein L14p/L23e family protein	0.26	Orthogroups_2024-Update
Glyma.19G167800	No alias	Ribosomal protein L14p/L23e family protein	0.09	Orthogroups_2024-Update
HORVU1Hr1G039160.1	No alias	component *(uL14) of large ribosomal-subunit (LSU) proteome	0.14	Orthogroups_2024-Update
HORVU4Hr1G083840.1	No alias	component *(uL14) of large ribosomal-subunit (LSU) proteome	0.17	Orthogroups_2024-Update
HORVU6Hr1G090170.1	No alias	component *(uL14) of large ribosomal-subunit (LSU) proteome	0.18	Orthogroups_2024-Update
Kfl00761_0070	kfl00761_0070_v1.1	(at3g04400 : 234.0) embryo defective 2171 (emb2171);...	0.07	Orthogroups_2024-Update
MA_10432200g0010	No alias	(at3g04400 : 278.0) embryo defective 2171 (emb2171);...	0.04	Orthogroups_2024-Update
Mp6g14310.1	No alias	component RPL23 of LSU proteome component	0.11	Orthogroups_2024-Update
PSME_00015897-RA	No alias	(at3g04400 : 271.0) embryo defective 2171 (emb2171);...	0.14	Orthogroups_2024-Update
Potri.002G257500	No alias	Ribosomal protein L14p/L23e family protein	0.1	Orthogroups_2024-Update
Potri.010G066400	No alias	Ribosomal protein L14p/L23e family protein	0.04	Orthogroups_2024-Update
Potri.010G167700	No alias	Ribosomal protein L14p/L23e family protein	0.03	Orthogroups_2024-Update
Pp1s114_79V6	No alias	60s ribosomal protein l23	0.08	Orthogroups_2024-Update
Pp1s15_152V6	No alias	60s ribosomal protein l23	0.09	Orthogroups_2024-Update
Pp1s280_69V6	No alias	60s ribosomal protein l23	0.21	Orthogroups_2024-Update
Pp1s73_232V6	No alias	60s ribosomal protein l23	0.13	Orthogroups_2024-Update
Seita.1G363100.1	No alias	component *(uL14) of large ribosomal-subunit (LSU) proteome	0.35	Orthogroups_2024-Update
Seita.9G228700.1	No alias	component *(uL14) of large ribosomal-subunit (LSU) proteome	0.06	Orthogroups_2024-Update
Seita.9G546200.1	No alias	component *(uL14) of large ribosomal-subunit (LSU) proteome	0.2	Orthogroups_2024-Update
Solyc06g008170	No alias	50S ribosomal protein L14 (AHRD V3.3 *** A0A0K9PMD0_ZOSMR)	0.09	Orthogroups_2024-Update
Solyc06g083780	No alias	50S ribosomal protein L14 (AHRD V3.3 *** A0A0K9PMD0_ZOSMR)	0.16	Orthogroups_2024-Update
Solyc09g072870	No alias	50S ribosomal protein L14 (AHRD V3.3 *** A0A0K9PMD0_ZOSMR)	0.24	Orthogroups_2024-Update
Solyc09g090610	No alias	50S ribosomal protein L14 (AHRD V3.3 *** A0A0K9PMD0_ZOSMR)	0.13	Orthogroups_2024-Update
Sopen06g035190	No alias	Ribosomal protein L14p/L23e	0.33	Orthogroups_2024-Update
Sopen09g028670	No alias	Ribosomal protein L14p/L23e	0.31	Orthogroups_2024-Update
Sopen09g033550	No alias	Ribosomal protein L14p/L23e	0.18	Orthogroups_2024-Update
evm.model.contig_548.2	No alias	(at3g04400 : 225.0) embryo defective 2171 (emb2171);...	0.49	Orthogroups_2024-Update
evm.model.tig00021290.9	No alias	(at3g04400 : 253.0) embryo defective 2171 (emb2171);...	0.22	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	16Dec
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	16Dec
BP	GO:0006412	translation	IEA	16Dec
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Predicted GO
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0003746	translation elongation factor activity	IEP	Predicted GO
MF	GO:0004576	oligosaccharyl transferase activity	IEP	Predicted GO
BP	GO:0006325	chromatin organization	IEP	Predicted GO
BP	GO:0006334	nucleosome assembly	IEP	Predicted GO
BP	GO:0006414	translational elongation	IEP	Predicted GO
MF	GO:0008097	5S rRNA binding	IEP	Predicted GO
MF	GO:0008135	translation factor activity, RNA binding	IEP	Predicted GO
CC	GO:0015934	large ribosomal subunit	IEP	Predicted GO
MF	GO:0019843	rRNA binding	IEP	Predicted GO
BP	GO:0022607	cellular component assembly	IEP	Predicted GO
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Predicted GO
MF	GO:0030515	snoRNA binding	IEP	Predicted GO
BP	GO:0034622	cellular protein-containing complex assembly	IEP	Predicted GO
BP	GO:0034728	nucleosome organization	IEP	Predicted GO
BP	GO:0042254	ribosome biogenesis	IEP	Predicted GO
BP	GO:0043933	protein-containing complex subunit organization	IEP	Predicted GO
CC	GO:0044391	ribosomal subunit	IEP	Predicted GO
BP	GO:0065003	protein-containing complex assembly	IEP	Predicted GO
BP	GO:0065004	protein-DNA complex assembly	IEP	Predicted GO
BP	GO:0071824	protein-DNA complex subunit organization	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR000218	Ribosomal_L14P	22	140

External Links

No external refs found!

Sobic.001G510800.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation