1. Home
  2. Species
  3. Sorghum bicolor
  4. Sequence
  5. Sobic.001G518400.1

Sobic.001G518400.1


Description : component *(EH1/EH2) of TPLATE AP-2 co-adaptor complex


Gene families : OG_42_0001824 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001824_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.001G518400.1
Cluster HCAA Clusters: Cluster_102

Target Alias Description ECC score Gene Family Method Actions
At1g20760 No alias Calcium-binding EF hand family protein... 0.03 Orthogroups_2024-Update
Bradi1g29690 No alias Calcium-binding EF hand family protein 0.05 Orthogroups_2024-Update
HORVU4Hr1G082280.2 No alias component *(EH1/EH2) of TPLATE AP-2 co-adaptor complex 0.02 Orthogroups_2024-Update
Kfl00218_0010 kfl00218_0010_v1.1 (at1g21630 : 119.0) Calcium-binding EF hand family... 0.02 Orthogroups_2024-Update
Kfl00218_0020 kfl00218_0020_v1.1 (at1g21630 : 149.0) Calcium-binding EF hand family... 0.02 Orthogroups_2024-Update
MA_10434216g0010 No alias (at1g21630 : 380.0) Calcium-binding EF hand family... 0.04 Orthogroups_2024-Update
Pp1s149_18V6 No alias calcium ion binding 0.06 Orthogroups_2024-Update
Pp1s22_272V6 No alias calcium ion binding 0.04 Orthogroups_2024-Update
Seita.4G287700.1 No alias component *(EH1/EH2) of TPLATE AP-2 co-adaptor complex 0.04 Orthogroups_2024-Update
Seita.9G553600.1 No alias component *(EH1/EH2) of TPLATE AP-2 co-adaptor complex 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEA 16Dec
MF GO:0005515 protein binding IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005096 GTPase activator activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
BP GO:0006397 mRNA processing IEP Predicted GO
BP GO:0006886 intracellular protein transport IEP Predicted GO
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Predicted GO
MF GO:0008047 enzyme activator activity IEP Predicted GO
BP GO:0008104 protein localization IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
BP GO:0009966 regulation of signal transduction IEP Predicted GO
BP GO:0010646 regulation of cell communication IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
BP GO:0016192 vesicle-mediated transport IEP Predicted GO
BP GO:0023051 regulation of signaling IEP Predicted GO
CC GO:0030117 membrane coat IEP Predicted GO
CC GO:0030120 vesicle coat IEP Predicted GO
CC GO:0030127 COPII vesicle coat IEP Predicted GO
MF GO:0030695 GTPase regulator activity IEP Predicted GO
BP GO:0032012 regulation of ARF protein signal transduction IEP Predicted GO
BP GO:0033036 macromolecule localization IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
CC GO:0044425 membrane part IEP Predicted GO
CC GO:0044433 cytoplasmic vesicle part IEP Predicted GO
BP GO:0045184 establishment of protein localization IEP Predicted GO
BP GO:0046578 regulation of Ras protein signal transduction IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
BP GO:0048193 Golgi vesicle transport IEP Predicted GO
BP GO:0048583 regulation of response to stimulus IEP Predicted GO
MF GO:0051020 GTPase binding IEP Predicted GO
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Predicted GO
BP GO:0071702 organic substance transport IEP Predicted GO
BP GO:0071705 nitrogen compound transport IEP Predicted GO
MF GO:0098772 molecular function regulator IEP Predicted GO
CC GO:0098796 membrane protein complex IEP Predicted GO
BP GO:1902531 regulation of intracellular signal transduction IEP Predicted GO
InterPro domains Description Start Stop
IPR002048 EF_hand_dom 8 26
IPR000261 EH_dom 416 487
No external refs found!