Sobic.001G527100.1


Description : component *(uL11c) of large plastid ribosomal-subunit proteome


Gene families : OG_42_0006605 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0006605_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.001G527100.1
Cluster HCAA Clusters: Cluster_146

Target Alias Description ECC score Gene Family Method Actions
230830 No alias plastid ribosomal protein l11 0.02 Orthogroups_2024-Update
Bradi1g77060 No alias plastid ribosomal protein l11 0.06 Orthogroups_2024-Update
Brara.I02689.1 No alias component *(uL11c) of large plastid ribosomal-subunit proteome 0.14 Orthogroups_2024-Update
Cre10.g423650 No alias plastid ribosomal protein l11 0.11 Orthogroups_2024-Update
GRMZM2G176820 No alias plastid ribosomal protein l11 0.07 Orthogroups_2024-Update
Glyma.01G201000 No alias plastid ribosomal protein l11 0.03 Orthogroups_2024-Update
HORVU4Hr1G084830.2 No alias component *(uL11c) of large plastid ribosomal-subunit proteome 0.14 Orthogroups_2024-Update
Kfl00092_0090 kfl00092_0090_v1.1 (at1g32990 : 190.0) mutant has Decreased effective... 0.05 Orthogroups_2024-Update
LOC_Os03g03020 No alias L11 domain containing ribosomal protein, putative, expressed 0.05 Orthogroups_2024-Update
Mp7g12110.1 No alias component psRPL11 of large ribosomal subunit proteome 0.02 Orthogroups_2024-Update
Potri.001G450800 No alias plastid ribosomal protein l11 0.07 Orthogroups_2024-Update
Potri.011G150700 No alias plastid ribosomal protein l11 0.04 Orthogroups_2024-Update
Pp1s141_43V6 No alias ribosomal protein l11 0.15 Orthogroups_2024-Update
Pp1s46_69V6 No alias ribosomal protein l11 0.02 Orthogroups_2024-Update
Seita.9G561900.1 No alias component *(uL11c) of large plastid ribosomal-subunit proteome 0.21 Orthogroups_2024-Update
Sopen08g031560 No alias Ribosomal protein L11, N-terminal domain 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA 16Dec
CC GO:0005840 ribosome IEA 16Dec
BP GO:0006412 translation IEA 16Dec
Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Predicted GO
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006298 mismatch repair IEP Predicted GO
BP GO:0006352 DNA-templated transcription, initiation IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
BP GO:0006415 translational termination IEP Predicted GO
BP GO:0006418 tRNA aminoacylation for protein translation IEP Predicted GO
BP GO:0006520 cellular amino acid metabolic process IEP Predicted GO
BP GO:0006612 protein targeting to membrane IEP Predicted GO
BP GO:0006613 cotranslational protein targeting to membrane IEP Predicted GO
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0008104 protein localization IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
MF GO:0016859 cis-trans isomerase activity IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Predicted GO
BP GO:0017038 protein import IEP Predicted GO
BP GO:0022411 cellular component disassembly IEP Predicted GO
MF GO:0030976 thiamine pyrophosphate binding IEP Predicted GO
MF GO:0030983 mismatched DNA binding IEP Predicted GO
BP GO:0032984 protein-containing complex disassembly IEP Predicted GO
BP GO:0033036 macromolecule localization IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
BP GO:0043038 amino acid activation IEP Predicted GO
BP GO:0043039 tRNA aminoacylation IEP Predicted GO
BP GO:0043624 cellular protein complex disassembly IEP Predicted GO
BP GO:0045047 protein targeting to ER IEP Predicted GO
BP GO:0045184 establishment of protein localization IEP Predicted GO
MF GO:0046422 violaxanthin de-epoxidase activity IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0070972 protein localization to endoplasmic reticulum IEP Predicted GO
BP GO:0071586 CAAX-box protein processing IEP Predicted GO
BP GO:0071702 organic substance transport IEP Predicted GO
BP GO:0071705 nitrogen compound transport IEP Predicted GO
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
MF GO:1901681 sulfur compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR020783 Ribosomal_L11_C 136 204
IPR020784 Ribosomal_L11_N 74 131
No external refs found!