1. Home
  2. Species
  3. Sorghum bicolor
  4. Sequence
  5. Sobic.001G534300.1

Sobic.001G534300.1


Description : Trihelix-type transcription factor


Gene families : OG_42_0000788 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000788_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.001G534300.1
Cluster HCAA Clusters: Cluster_36

Target Alias Description ECC score Gene Family Method Actions
A4A49_32631 No alias trihelix transcription factor gt-2 0.02 Orthogroups_2024-Update
Bradi1g77610 No alias Duplicated homeodomain-like superfamily protein 0.06 Orthogroups_2024-Update
Glyma.02G082000 No alias Duplicated homeodomain-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.16G167600 No alias Duplicated homeodomain-like superfamily protein 0.04 Orthogroups_2024-Update
Pp1s19_341V6 No alias transcription 0.01 Orthogroups_2024-Update
Seita.7G184300.1 No alias Unknown function 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0004807 triose-phosphate isomerase activity IEP Predicted GO
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Predicted GO
BP GO:0009719 response to endogenous stimulus IEP Predicted GO
BP GO:0009725 response to hormone IEP Predicted GO
BP GO:0010033 response to organic substance IEP Predicted GO
BP GO:0016192 vesicle-mediated transport IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
MF GO:0016860 intramolecular oxidoreductase activity IEP Predicted GO
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP Predicted GO
BP GO:0042221 response to chemical IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
BP GO:0048193 Golgi vesicle transport IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!