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  5. Sobic.002G023900.1

Sobic.002G023900.1


Description : KNOX-type transcription factor


Gene families : OG_42_0000234 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000234_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.002G023900.1
Cluster HCAA Clusters: Cluster_98

Target Alias Description ECC score Gene Family Method Actions
A4A49_16694 No alias homeotic protein knotted-1 0.03 Orthogroups_2024-Update
At5g25220 No alias KNAT3 [Source:UniProtKB/TrEMBL;Acc:A0A178U9D1] 0.03 Orthogroups_2024-Update
Brara.B01915.1 No alias KNOX-type transcription factor 0.04 Orthogroups_2024-Update
Brara.H02211.1 No alias KNOX-type transcription factor 0.02 Orthogroups_2024-Update
Brara.I01459.1 No alias KNOX-type transcription factor 0.04 Orthogroups_2024-Update
Glyma.18G083100 No alias KNOTTED1-like homeobox gene 5 0.02 Orthogroups_2024-Update
LOC_Os03g51710 No alias homeobox protein knotted-1, putative, expressed 0.03 Orthogroups_2024-Update
PSME_00035379-RA No alias (o04135|knap2_maldo : 179.0) Homeobox protein... 0.02 Orthogroups_2024-Update
Potri.006G259400 No alias KNOTTED1-like homeobox gene 3 0.02 Orthogroups_2024-Update
Solyc05g005090 No alias Knotted-1 homeobox protein (AHRD V3.3 *** R9R650_9FABA) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA 16Dec
CC GO:0005634 nucleus IEA 16Dec
BP GO:0006355 regulation of transcription, DNA-templated IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0005215 transporter activity IEP Predicted GO
MF GO:0005244 voltage-gated ion channel activity IEP Predicted GO
MF GO:0005247 voltage-gated chloride channel activity IEP Predicted GO
MF GO:0005253 anion channel activity IEP Predicted GO
MF GO:0005254 chloride channel activity IEP Predicted GO
BP GO:0006810 transport IEP Predicted GO
BP GO:0006820 anion transport IEP Predicted GO
BP GO:0006821 chloride transport IEP Predicted GO
BP GO:0006835 dicarboxylic acid transport IEP Predicted GO
MF GO:0008308 voltage-gated anion channel activity IEP Predicted GO
MF GO:0015108 chloride transmembrane transporter activity IEP Predicted GO
BP GO:0015740 C4-dicarboxylate transport IEP Predicted GO
BP GO:0015743 malate transport IEP Predicted GO
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP Predicted GO
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Predicted GO
MF GO:0022832 voltage-gated channel activity IEP Predicted GO
MF GO:0022857 transmembrane transporter activity IEP Predicted GO
MF GO:0033897 ribonuclease T2 activity IEP Predicted GO
BP GO:0051179 localization IEP Predicted GO
BP GO:0051234 establishment of localization IEP Predicted GO
BP GO:0055085 transmembrane transport IEP Predicted GO
InterPro domains Description Start Stop
IPR005541 KNOX2 145 188
IPR008422 Homeobox_KN_domain 277 316
IPR005540 KNOX1 93 134
IPR005539 ELK_dom 237 258
No external refs found!