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  5. Sobic.002G031000.1

Sobic.002G031000.1


Description : regulatory protein *(PIF) of red/far-red light perception & bHLH-type transcription factor


Gene families : OG_42_0000449 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000449_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.002G031000.1
Cluster HCAA Clusters: Cluster_237

Target Alias Description ECC score Gene Family Method Actions
A4A49_09791 No alias transcription factor pif3 0.02 Orthogroups_2024-Update
A4A49_17964 No alias hypothetical protein 0.02 Orthogroups_2024-Update
At2g43010 No alias phytochrome interacting factor 4 [Source:TAIR;Acc:AT2G43010] 0.02 Orthogroups_2024-Update
Glyma.14G032200 No alias phytochrome interacting factor 4 0.03 Orthogroups_2024-Update
Glyma.19G222000 No alias phytochrome interacting factor 3 0.04 Orthogroups_2024-Update
LOC_Os07g05010 No alias helix-loop-helix DNA-binding domain containing protein, expressed 0.02 Orthogroups_2024-Update
Mp3g17350.1 No alias transcription factor (bHLH) 0.02 Orthogroups_2024-Update
Pp1s68_85V6 No alias dna binding 0.03 Orthogroups_2024-Update
Seita.2G029600.1 No alias regulatory protein *(PIF) of red/far-red light... 0.03 Orthogroups_2024-Update
Seita.3G384900.1 No alias regulatory protein *(PIF) of red/far-red light... 0.03 Orthogroups_2024-Update
Seita.9G160700.1 No alias regulatory protein *(PIF) of red/far-red light... 0.02 Orthogroups_2024-Update
Sopen04g032290 No alias Helix-loop-helix DNA-binding domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA 16Dec
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Type GO Term Name Evidence Source
CC GO:0005575 cellular_component IEP Predicted GO
MF GO:0010277 chlorophyllide a oxygenase [overall] activity IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Predicted GO
MF GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) IEP Predicted GO
MF GO:0051536 iron-sulfur cluster binding IEP Predicted GO
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Predicted GO
MF GO:0051540 metal cluster binding IEP Predicted GO
InterPro domains Description Start Stop
IPR011598 bHLH_dom 219 265
No external refs found!