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At3g45460


Description : RBR-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:Q1PEI1]


Gene families : OG_42_0000330 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000330_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At3g45460
Cluster HCCA clusters: Cluster_230

Target Alias Description ECC score Gene Family Method Actions
At2g21420 No alias RBR-type E3 ubiquitin transferase... 0.02 Orthogroups_2024-Update
At2g25360 No alias RBR-type E3 ubiquitin transferase... 0.03 Orthogroups_2024-Update
At5g60250 No alias RBR-type E3 ubiquitin transferase... 0.03 Orthogroups_2024-Update
Brara.C01049.1 No alias plant-specific E3 ubiquitin ligase *(RSL/RFA) 0.01 Orthogroups_2024-Update
Brara.F01844.1 No alias plant-specific E3 ubiquitin ligase *(RSL/RFA) 0.02 Orthogroups_2024-Update
Sobic.002G126100.1 No alias plant-specific E3 ubiquitin ligase *(RSL/RFA) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003954 NADH dehydrogenase activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
MF GO:0005199 structural constituent of cell wall IEP Predicted GO
BP GO:0006808 regulation of nitrogen utilization IEP Predicted GO
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP Predicted GO
MF GO:0008408 3'-5' exonuclease activity IEP Predicted GO
BP GO:0009664 plant-type cell wall organization IEP Predicted GO
BP GO:0016043 cellular component organization IEP Predicted GO
CC GO:0035145 exon-exon junction complex IEP Predicted GO
BP GO:0045229 external encapsulating structure organization IEP Predicted GO
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP Predicted GO
BP GO:0071554 cell wall organization or biogenesis IEP Predicted GO
BP GO:0071555 cell wall organization IEP Predicted GO
BP GO:0071669 plant-type cell wall organization or biogenesis IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
InterPro domains Description Start Stop
IPR002156 RNaseH_domain 51 159
IPR002867 IBR_dom 240 304
No external refs found!