Sobic.002G042600.1

Description : deubiquitinase *(UBP12-13) & deubiquitinase *(UBP12-13)

Gene families : OG_42_0001109 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001109_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor: Sobic.002G042600.1
Cluster	HCAA Clusters: Cluster_156

Target	Alias	Description	ECC score	Gene Family Method
444302	No alias	ubiquitin-specific protease 12	0.04	Orthogroups_2024-Update
A4A49_35205	No alias	ubiquitin carboxyl-terminal hydrolase 12	0.04	Orthogroups_2024-Update
Bradi1g56780	No alias	ubiquitin-specific protease 12	0.09	Orthogroups_2024-Update
Bradi4g07167	No alias	ubiquitin-specific protease 12	0.05	Orthogroups_2024-Update
Bradi4g15710	No alias	ubiquitin-specific protease 12	0.07	Orthogroups_2024-Update
GRMZM2G071441	No alias	ubiquitin-specific protease 13	0.04	Orthogroups_2024-Update
Glyma.10G120900	No alias	ubiquitin-specific protease 13	0.03	Orthogroups_2024-Update
Glyma.14G044500	No alias	ubiquitin-specific protease 12	0.04	Orthogroups_2024-Update
Glyma.20G054600	No alias	ubiquitin-specific protease 13	0.05	Orthogroups_2024-Update
HORVU5Hr1G031980.11	No alias	deubiquitinase (UBP12-13) & deubiquitinase (UBP12-13)	0.03	Orthogroups_2024-Update
MA_10428769g0010	No alias	(at5g06600 : 1641.0) Encodes a ubiquitin-specific...	0.02	Orthogroups_2024-Update
Mp3g15430.1	No alias	ubiquitin protease (USP7). deubiquitinase (UBP12-13)	0.02	Orthogroups_2024-Update
PSME_00008044-RA	No alias	(at5g06600 : 1769.0) Encodes a ubiquitin-specific...	0.02	Orthogroups_2024-Update
Pp1s123_138V6	No alias	ubiquitin carboxyl-terminal	0.03	Orthogroups_2024-Update
Seita.2G042100.1	No alias	deubiquitinase (UBP12-13) & deubiquitinase (UBP12-13)	0.03	Orthogroups_2024-Update
Seita.3G361900.1	No alias	deubiquitinase (UBP12-13) & deubiquitinase (UBP12-13)	0.09	Orthogroups_2024-Update
Seita.5G334000.1	No alias	deubiquitinase (UBP12-13) & deubiquitinase (UBP12-13)	0.06	Orthogroups_2024-Update
Seita.8G159100.1	No alias	deubiquitinase (UBP12-13) & deubiquitinase (UBP12-13)	0.06	Orthogroups_2024-Update
evm.model.tig00021350.29	No alias	(at5g06600 : 152.0) Encodes a ubiquitin-specific...	0.02	Orthogroups_2024-Update
evm.model.tig00021350.30	No alias	(at5g06600 : 524.0) Encodes a ubiquitin-specific...	0.01	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004843	thiol-dependent ubiquitin-specific protease activity	IEA	16Dec
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	16Dec
BP	GO:0006464	cellular protein modification process	None	Extended
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008233	peptidase activity	None	Extended
MF	GO:0008234	cysteine-type peptidase activity	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016579	protein deubiquitination	IEA	16Dec
MF	GO:0016787	hydrolase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019783	ubiquitin-like protein-specific protease activity	None	Extended
BP	GO:0036211	protein modification process	None	Extended
MF	GO:0036459	thiol-dependent ubiquitinyl hydrolase activity	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
MF	GO:0070011	peptidase activity, acting on L-amino acid peptides	None	Extended
BP	GO:0070646	protein modification by small protein removal	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0101005	ubiquitinyl hydrolase activity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003682	chromatin binding	IEP	Predicted GO
MF	GO:0004197	cysteine-type endopeptidase activity	IEP	Predicted GO
MF	GO:0004198	calcium-dependent cysteine-type endopeptidase activity	IEP	Predicted GO
MF	GO:0005484	SNAP receptor activity	IEP	Predicted GO
CC	GO:0005634	nucleus	IEP	Predicted GO
BP	GO:0006325	chromatin organization	IEP	Predicted GO
BP	GO:0006338	chromatin remodeling	IEP	Predicted GO
BP	GO:0006397	mRNA processing	IEP	Predicted GO
BP	GO:0006886	intracellular protein transport	IEP	Predicted GO
BP	GO:0006890	retrograde vesicle-mediated transport, Golgi to ER	IEP	Predicted GO
BP	GO:0008104	protein localization	IEP	Predicted GO
BP	GO:0015031	protein transport	IEP	Predicted GO
BP	GO:0015833	peptide transport	IEP	Predicted GO
BP	GO:0016071	mRNA metabolic process	IEP	Predicted GO
BP	GO:0016192	vesicle-mediated transport	IEP	Predicted GO
MF	GO:0016624	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor	IEP	Predicted GO
MF	GO:0016903	oxidoreductase activity, acting on the aldehyde or oxo group of donors	IEP	Predicted GO
MF	GO:0019899	enzyme binding	IEP	Predicted GO
CC	GO:0030117	membrane coat	IEP	Predicted GO
BP	GO:0031123	RNA 3'-end processing	IEP	Predicted GO
BP	GO:0031124	mRNA 3'-end processing	IEP	Predicted GO
MF	GO:0031267	small GTPase binding	IEP	Predicted GO
MF	GO:0031491	nucleosome binding	IEP	Predicted GO
BP	GO:0033036	macromolecule localization	IEP	Predicted GO
BP	GO:0042886	amide transport	IEP	Predicted GO
CC	GO:0043227	membrane-bounded organelle	IEP	Predicted GO
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Predicted GO
MF	GO:0044877	protein-containing complex binding	IEP	Predicted GO
BP	GO:0045184	establishment of protein localization	IEP	Predicted GO
BP	GO:0046907	intracellular transport	IEP	Predicted GO
BP	GO:0048193	Golgi vesicle transport	IEP	Predicted GO
MF	GO:0051020	GTPase binding	IEP	Predicted GO
BP	GO:0051641	cellular localization	IEP	Predicted GO
BP	GO:0051649	establishment of localization in cell	IEP	Predicted GO
BP	GO:0071702	organic substance transport	IEP	Predicted GO
BP	GO:0071705	nitrogen compound transport	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR024729	USP7_ICP0-binding_dom	626	878
IPR029346	USP_C	888	1096
IPR001394	Peptidase_C19_UCH	201	522
IPR002083	MATH/TRAF_dom	63	183

External Links

No external refs found!

Sobic.002G042600.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation