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  5. At3g45540

At3g45540


Description : RBR-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:Q9M1F3]


Gene families : OG_42_0000330 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000330_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At3g45540
Cluster HCCA clusters: Cluster_185

Target Alias Description ECC score Gene Family Method Actions
At3g14250 No alias RBR-type E3 ubiquitin transferase... 0.04 Orthogroups_2024-Update
At3g45510 No alias RBR-type E3 ubiquitin transferase... 0.05 Orthogroups_2024-Update
At5g60250 No alias RBR-type E3 ubiquitin transferase... 0.04 Orthogroups_2024-Update
Brara.C01049.1 No alias plant-specific E3 ubiquitin ligase *(RSL/RFA) 0.01 Orthogroups_2024-Update
GRMZM2G066171 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Potri.018G064300 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Solyc03g115920 No alias RING/U-box superfamily protein (AHRD V3.3 *** AT3G14250.1) 0.05 Orthogroups_2024-Update
Solyc03g117860 No alias RING/U-box superfamily protein (AHRD V3.3 *-* AT3G14250.1) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003885 D-arabinono-1,4-lactone oxidase activity IEP Predicted GO
MF GO:0004402 histone acetyltransferase activity IEP Predicted GO
CC GO:0005743 mitochondrial inner membrane IEP Predicted GO
BP GO:0006473 protein acetylation IEP Predicted GO
BP GO:0006475 internal protein amino acid acetylation IEP Predicted GO
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Predicted GO
MF GO:0008080 N-acetyltransferase activity IEP Predicted GO
BP GO:0016573 histone acetylation IEP Predicted GO
MF GO:0016899 oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor IEP Predicted GO
BP GO:0018393 internal peptidyl-lysine acetylation IEP Predicted GO
BP GO:0018394 peptidyl-lysine acetylation IEP Predicted GO
CC GO:0019866 organelle inner membrane IEP Predicted GO
BP GO:0019941 modification-dependent protein catabolic process IEP Predicted GO
MF GO:0031625 ubiquitin protein ligase binding IEP Predicted GO
MF GO:0034212 peptide N-acetyltransferase activity IEP Predicted GO
BP GO:0043543 protein acylation IEP Predicted GO
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Predicted GO
BP GO:0044265 cellular macromolecule catabolic process IEP Predicted GO
MF GO:0044389 ubiquitin-like protein ligase binding IEP Predicted GO
MF GO:0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer IEP Predicted GO
MF GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor IEP Predicted GO
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Predicted GO
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP Predicted GO
CC GO:0070469 respiratory chain IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
InterPro domains Description Start Stop
IPR002867 IBR_dom 169 235
IPR002867 IBR_dom 255 296
IPR018957 Znf_C3HC4_RING-type 100 145
No external refs found!