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  5. Sobic.002G045700.1

Sobic.002G045700.1


Description : EC_2.7 transferase transferring phosphorus-containing group & phosphorolytic exoribonuclease *(PNP)


Gene families : OG_42_0002046 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002046_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Sorghum bicolor: Sobic.002G045700.1
Cluster HCAA Clusters: Cluster_129

Target Alias Description ECC score Gene Family Method Actions
84724 No alias polyribonucleotide nucleotidyltransferase, putative 0.03 Orthogroups_2024-Update
Bradi1g56280 No alias polyribonucleotide nucleotidyltransferase, putative 0.12 Orthogroups_2024-Update
Glyma.16G036100 No alias polyribonucleotide nucleotidyltransferase, putative 0.05 Orthogroups_2024-Update
Glyma.19G116700 No alias polyribonucleotide nucleotidyltransferase, putative 0.03 Orthogroups_2024-Update
LOC_Os07g07310 No alias polynucleotide phosphorylase, putative, expressed 0.04 Orthogroups_2024-Update
Potri.013G065700 No alias polyribonucleotide nucleotidyltransferase, putative 0.08 Orthogroups_2024-Update
Pp1s307_19V6 No alias polyribonucleotide nucleotidyltransferase 0.04 Orthogroups_2024-Update
Pp1s59_354V6 No alias polyribonucleotide nucleotidyltransferase 0.02 Orthogroups_2024-Update
Seita.2G044800.1 No alias EC_2.7 transferase transferring phosphorus-containing... 0.11 Orthogroups_2024-Update
Solyc08g066120 No alias polyribonucleotide nucleotidyltransferase (AHRD V3.3 ***... 0.06 Orthogroups_2024-Update
Solyc08g066140 No alias Polyribonucleotide nucleotidyltransferase (AHRD V3.3 *-*... 0.03 Orthogroups_2024-Update
Sopen08g019820 No alias 3' exoribonuclease family, domain 1 0.02 Orthogroups_2024-Update
evm.model.contig_2150.2 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA 16Dec
MF GO:0003723 RNA binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003690 double-stranded DNA binding IEP Predicted GO
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0004019 adenylosuccinate synthase activity IEP Predicted GO
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEP Predicted GO
MF GO:0004177 aminopeptidase activity IEP Predicted GO
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Predicted GO
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Predicted GO
MF GO:0004832 valine-tRNA ligase activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006298 mismatch repair IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006418 tRNA aminoacylation for protein translation IEP Predicted GO
BP GO:0006438 valyl-tRNA aminoacylation IEP Predicted GO
BP GO:0006520 cellular amino acid metabolic process IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
MF GO:0008175 tRNA methyltransferase activity IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
MF GO:0030983 mismatched DNA binding IEP Predicted GO
CC GO:0031011 Ino80 complex IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
CC GO:0033202 DNA helicase complex IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0043038 amino acid activation IEP Predicted GO
BP GO:0043039 tRNA aminoacylation IEP Predicted GO
CC GO:0044454 nuclear chromosome part IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
CC GO:0070603 SWI/SNF superfamily-type complex IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
CC GO:0097346 INO80-type complex IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
CC GO:1904949 ATPase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR004088 KH_dom_type_1 681 737
IPR003029 S1_domain 753 814
IPR001247 ExoRNase_PH_dom1 83 213
IPR001247 ExoRNase_PH_dom1 440 574
IPR015847 ExoRNase_PH_dom2 218 278
No external refs found!