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  5. Sobic.002G047000.2

Sobic.002G047000.2


Description : methylation reader *(ECT)


Gene families : OG_42_0000396 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000396_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.002G047000.2
Cluster HCAA Clusters: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
At1g09810 No alias Evolutionarily conserved C-terminal region 11... 0.02 Orthogroups_2024-Update
Bradi1g05970 No alias evolutionarily conserved C-terminal region 2 0.09 Orthogroups_2024-Update
Brara.B01161.1 No alias methylation reader *(ECT) 0.04 Orthogroups_2024-Update
Brara.B02570.1 No alias methylation reader *(ECT) 0.05 Orthogroups_2024-Update
Brara.C03469.1 No alias methylation reader *(ECT) 0.06 Orthogroups_2024-Update
GRMZM2G340130 No alias evolutionarily conserved C-terminal region 2 0.04 Orthogroups_2024-Update
Glyma.15G136400 No alias evolutionarily conserved C-terminal region 7 0.03 Orthogroups_2024-Update
Glyma.19G110800 No alias evolutionarily conserved C-terminal region 2 0.02 Orthogroups_2024-Update
HORVU5Hr1G104380.1 No alias methylation reader *(ECT) 0.04 Orthogroups_2024-Update
Potri.001G056100 No alias evolutionarily conserved C-terminal region 5 0.02 Orthogroups_2024-Update
Potri.004G223800 No alias evolutionarily conserved C-terminal region 11 0.06 Orthogroups_2024-Update
Seita.2G046200.1 No alias methylation reader *(ECT) 0.07 Orthogroups_2024-Update
Seita.9G059600.1 No alias methylation reader *(ECT) 0.1 Orthogroups_2024-Update
Seita.9G092900.1 No alias methylation reader *(ECT) 0.04 Orthogroups_2024-Update
Sopen01g016960 No alias YT521-B-like domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0003743 translation initiation factor activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005643 nuclear pore IEP Predicted GO
CC GO:0005737 cytoplasm IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006413 translational initiation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
MF GO:0031369 translation initiation factor binding IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR007275 YTH_domain 404 542
No external refs found!