Description : Unknown function
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Sorghum bicolor: Sobic.002G048200.1 | |
Cluster | HCAA Clusters: Cluster_165 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
109721 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
111075 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
412514 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
AC203841.3_FG002 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
At3g29230 | No alias | Pentatricopeptide repeat-containing protein At3g29230... | 0.03 | Orthogroups_2024-Update | |
At5g59200 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.03 | Orthogroups_2024-Update | |
Bradi2g06450 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.05 | Orthogroups_2024-Update | |
Bradi2g15700 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
Bradi2g32290 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Brara.C02021.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
GRMZM2G129783 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
GRMZM2G168170 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.02G201800 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | Orthogroups_2024-Update | |
Glyma.03G189000 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
Glyma.13G313200 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
HORVU0Hr1G007880.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
HORVU1Hr1G090780.5 | No alias | RNA editing factor *(ECB2/VAC1) | 0.03 | Orthogroups_2024-Update | |
PSME_00002078-RA | No alias | (at3g12770 : 644.0) Encodes a pentatricopeptide repeat... | 0.03 | Orthogroups_2024-Update | |
PSME_00004346-RA | No alias | (at4g18750 : 679.0) Encodes a pentatricopeptide (PPR)... | 0.03 | Orthogroups_2024-Update | |
PSME_00021884-RA | No alias | (at2g27610 : 613.0) Tetratricopeptide repeat (TPR)-like... | 0.02 | Orthogroups_2024-Update | |
PSME_00036639-RA | No alias | (at1g11290 : 691.0) Pentatricopeptide Repeat Protein... | 0.02 | Orthogroups_2024-Update | |
PSME_00042426-RA | No alias | (at2g22070 : 552.0) pentatricopeptide (PPR)... | 0.03 | Orthogroups_2024-Update | |
Potri.007G050200 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
Potri.013G044700 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | Orthogroups_2024-Update | |
Potri.014G191200 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
Seita.2G047600.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Seita.2G068700.1 | No alias | RNA editing factor *(CRR28) | 0.02 | Orthogroups_2024-Update | |
Seita.5G044700.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
Seita.6G213800.1 | No alias | RNA editing factor *(DOT4) | 0.04 | Orthogroups_2024-Update | |
Seita.9G015400.1 | No alias | Unknown function | 0.05 | Orthogroups_2024-Update | |
Seita.9G548100.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
Solyc01g007850 | No alias | Pentatricopeptide repeat superfamily protein, putative... | 0.03 | Orthogroups_2024-Update | |
Solyc01g010510 | No alias | Pentatricopeptide repeat (PPR) superfamily protein (AHRD... | 0.02 | Orthogroups_2024-Update | |
Solyc01g110010 | No alias | Pentatricopeptide repeat-containing protein (AHRD V3.3... | 0.03 | Orthogroups_2024-Update | |
Sopen01g006160 | No alias | PPR repeat | 0.03 | Orthogroups_2024-Update | |
Sopen02g018640 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
Sopen03g038830 | No alias | PPR repeat family | 0.02 | Orthogroups_2024-Update | |
Sopen05g002740 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0008270 | zinc ion binding | IEA | 16Dec |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003824 | catalytic activity | IEP | Predicted GO |
MF | GO:0004386 | helicase activity | IEP | Predicted GO |
BP | GO:0006400 | tRNA modification | IEP | Predicted GO |
BP | GO:0008033 | tRNA processing | IEP | Predicted GO |
MF | GO:0008144 | drug binding | IEP | Predicted GO |
MF | GO:0008173 | RNA methyltransferase activity | IEP | Predicted GO |
MF | GO:0008175 | tRNA methyltransferase activity | IEP | Predicted GO |
MF | GO:0008176 | tRNA (guanine-N7-)-methyltransferase activity | IEP | Predicted GO |
MF | GO:0008483 | transaminase activity | IEP | Predicted GO |
MF | GO:0008757 | S-adenosylmethionine-dependent methyltransferase activity | IEP | Predicted GO |
BP | GO:0009451 | RNA modification | IEP | Predicted GO |
MF | GO:0015018 | galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity | IEP | Predicted GO |
MF | GO:0015020 | glucuronosyltransferase activity | IEP | Predicted GO |
MF | GO:0016423 | tRNA (guanine) methyltransferase activity | IEP | Predicted GO |
MF | GO:0016462 | pyrophosphatase activity | IEP | Predicted GO |
MF | GO:0016740 | transferase activity | IEP | Predicted GO |
MF | GO:0016769 | transferase activity, transferring nitrogenous groups | IEP | Predicted GO |
MF | GO:0016817 | hydrolase activity, acting on acid anhydrides | IEP | Predicted GO |
MF | GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | IEP | Predicted GO |
MF | GO:0017111 | nucleoside-triphosphatase activity | IEP | Predicted GO |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Predicted GO |
MF | GO:0036094 | small molecule binding | IEP | Predicted GO |
MF | GO:0043168 | anion binding | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR032867 | DYW_dom | 764 | 830 |
IPR002885 | Pentatricopeptide_repeat | 79 | 103 |
IPR002885 | Pentatricopeptide_repeat | 521 | 546 |
IPR002885 | Pentatricopeptide_repeat | 447 | 473 |
IPR002885 | Pentatricopeptide_repeat | 197 | 242 |
IPR002885 | Pentatricopeptide_repeat | 547 | 594 |
IPR002885 | Pentatricopeptide_repeat | 299 | 344 |
No external refs found! |