1. Home
  2. Species
  3. Sorghum bicolor
  4. Sequence
  5. Sobic.002G050900.2

Sobic.002G050900.2


Description : LRR-domain extensin


Gene families : OG_42_0000323 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000323_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.002G050900.2
Cluster HCAA Clusters: Cluster_91

Target Alias Description ECC score Gene Family Method Actions
A4A49_26804 No alias pollen-specific leucine-rich repeat extensin-like protein 1 0.05 Orthogroups_2024-Update
At2g15880 No alias Pollen-specific leucine-rich repeat extensin-like... 0.03 Orthogroups_2024-Update
At3g19020 No alias Pollen-specific leucine-rich repeat extensin-like... 0.03 Orthogroups_2024-Update
At4g28380 No alias Extensin-like protein [Source:UniProtKB/TrEMBL;Acc:O49448] 0.04 Orthogroups_2024-Update
Brara.C03718.1 No alias LRR-domain extensin 0.05 Orthogroups_2024-Update
Brara.H01238.1 No alias LRR-domain extensin 0.03 Orthogroups_2024-Update
Brara.K00970.1 No alias LRR-domain extensin 0.04 Orthogroups_2024-Update
GRMZM2G070322 No alias Leucine-rich repeat (LRR) family protein 0.02 Orthogroups_2024-Update
GRMZM2G082823 No alias leucine-rich repeat/extensin 1 0.03 Orthogroups_2024-Update
GRMZM2G300969 No alias Leucine-rich repeat (LRR) family protein 0.03 Orthogroups_2024-Update
GRMZM2G341410 No alias Leucine-rich repeat (LRR) family protein 0.04 Orthogroups_2024-Update
Glyma.01G005600 No alias Leucine-rich repeat (LRR) family protein 0.03 Orthogroups_2024-Update
Glyma.10G245100 No alias Leucine-rich repeat (LRR) family protein 0.04 Orthogroups_2024-Update
HORVU6Hr1G019290.2 No alias LRR-domain extensin 0.03 Orthogroups_2024-Update
LOC_Os01g41120 No alias retrotransposon protein, putative, Ty3-gypsy subclass, expressed 0.05 Orthogroups_2024-Update
MA_100985g0010 No alias (at4g13340 : 496.0) Leucine-rich repeat (LRR) family... 0.03 Orthogroups_2024-Update
MA_7188g0010 No alias (at4g18670 : 352.0) Leucine-rich repeat (LRR) family... 0.05 Orthogroups_2024-Update
Mp2g25390.1 No alias Leucine-rich repeat extensin-like protein 4... 0.02 Orthogroups_2024-Update
PSME_00026301-RA No alias (at4g13340 : 513.0) Leucine-rich repeat (LRR) family... 0.02 Orthogroups_2024-Update
PSME_00055770-RA No alias (at3g24480 : 504.0) Leucine-rich repeat (LRR) family... 0.03 Orthogroups_2024-Update
Potri.004G146400 No alias Leucine-rich repeat (LRR) family protein 0.05 Orthogroups_2024-Update
Potri.007G139200 No alias Leucine-rich repeat (LRR) family protein 0.03 Orthogroups_2024-Update
Potri.010G083100 No alias Leucine-rich repeat (LRR) family protein 0.03 Orthogroups_2024-Update
Potri.018G035100 No alias Leucine-rich repeat (LRR) family protein 0.03 Orthogroups_2024-Update
Seita.1G092900.1 No alias LRR-domain extensin 0.03 Orthogroups_2024-Update
Sobic.003G042200.2 No alias LRR-domain extensin 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001611 Leu-rich_rpt 145 164
IPR001611 Leu-rich_rpt 261 298
IPR013210 LRR_N_plant-typ 52 85
No external refs found!