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  5. Sobic.002G052000.2

Sobic.002G052000.2


Description : LHC-related protein *(ELIP)


Gene families : OG_42_0000421 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000421_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.002G052000.2
Cluster HCAA Clusters: Cluster_120

Target Alias Description ECC score Gene Family Method Actions
A4A49_24316 No alias early light-induced protein 1, chloroplastic 0.05 Orthogroups_2024-Update
A4A49_27530 No alias early light-induced protein 1, chloroplastic 0.07 Orthogroups_2024-Update
At3g22840 No alias ELIP1 [Source:UniProtKB/TrEMBL;Acc:A0A178VCA8] 0.03 Orthogroups_2024-Update
Bradi1g55560 No alias Chlorophyll A-B binding family protein 0.05 Orthogroups_2024-Update
Bradi1g55570 No alias Chlorophyll A-B binding family protein 0.03 Orthogroups_2024-Update
Bradi1g55600 No alias Chlorophyll A-B binding family protein 0.04 Orthogroups_2024-Update
Bradi1g55610 No alias Chlorophyll A-B binding family protein 0.03 Orthogroups_2024-Update
Bradi1g55620 No alias Chlorophyll A-B binding family protein 0.04 Orthogroups_2024-Update
Brara.A02698.1 No alias LHC-related protein *(ELIP) 0.04 Orthogroups_2024-Update
Brara.C03891.1 No alias LHC-related protein *(ELIP) 0.02 Orthogroups_2024-Update
Cre08.g384650 No alias Chlorophyll A-B binding family protein 0.01 Orthogroups_2024-Update
Cre09.g393173 No alias Chlorophyll A-B binding family protein 0.01 Orthogroups_2024-Update
Cre14.g626750 No alias Chlorophyll A-B binding family protein 0.01 Orthogroups_2024-Update
Cre16.g679250 No alias Chlorophyll A-B binding family protein 0.03 Orthogroups_2024-Update
Glyma.10G243800 No alias Chlorophyll A-B binding family protein 0.06 Orthogroups_2024-Update
Glyma.20G150600 No alias Chlorophyll A-B binding family protein 0.05 Orthogroups_2024-Update
HORVU0Hr1G008960.2 No alias LHC-related protein *(ELIP) 0.04 Orthogroups_2024-Update
HORVU0Hr1G013030.2 No alias LHC-related protein *(ELIP) 0.07 Orthogroups_2024-Update
HORVU0Hr1G023360.2 No alias LHC-related protein *(ELIP) 0.05 Orthogroups_2024-Update
HORVU0Hr1G031930.1 No alias LHC-related protein *(ELIP) 0.03 Orthogroups_2024-Update
HORVU0Hr1G038220.1 No alias LHC-related protein *(ELIP) 0.05 Orthogroups_2024-Update
HORVU1Hr1G067080.3 No alias LHC-related protein *(ELIP) 0.07 Orthogroups_2024-Update
HORVU1Hr1G087740.1 No alias LHC-related protein *(ELIP) 0.06 Orthogroups_2024-Update
HORVU4Hr1G063190.1 No alias LHC-related protein *(ELIP) 0.05 Orthogroups_2024-Update
HORVU4Hr1G066740.1 No alias LHC-related protein *(ELIP) 0.04 Orthogroups_2024-Update
HORVU4Hr1G066800.8 No alias LHC-related protein *(ELIP) 0.04 Orthogroups_2024-Update
HORVU4Hr1G066810.7 No alias LHC-related protein *(ELIP) 0.04 Orthogroups_2024-Update
HORVU5Hr1G000620.2 No alias LHC-related protein *(ELIP) 0.05 Orthogroups_2024-Update
HORVU5Hr1G063570.1 No alias LHC-related protein *(ELIP) 0.05 Orthogroups_2024-Update
HORVU5Hr1G063590.1 No alias LHC-related protein *(ELIP) 0.06 Orthogroups_2024-Update
HORVU5Hr1G063620.1 No alias LHC-related protein *(ELIP) 0.06 Orthogroups_2024-Update
HORVU5Hr1G063630.3 No alias LHC-related protein *(ELIP) 0.07 Orthogroups_2024-Update
HORVU5Hr1G063650.1 No alias LHC-related protein *(ELIP) 0.08 Orthogroups_2024-Update
HORVU5Hr1G063660.1 No alias LHC-related protein *(ELIP) 0.06 Orthogroups_2024-Update
HORVU5Hr1G063670.1 No alias LHC-related protein *(ELIP) 0.05 Orthogroups_2024-Update
Kfl00023_0130 kfl00023_0130_v1.1 no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
Kfl00052_0260 kfl00052_0260_v1.1 no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
LOC_Os07g08150 No alias early light-induced protein, chloroplast precursor,... 0.04 Orthogroups_2024-Update
MA_10058549g0010 No alias (at3g22840 : 143.0) Encodes an early light-inducible... 0.03 Orthogroups_2024-Update
Mp6g14520.1 No alias ELIP LHC-related protein 0.03 Orthogroups_2024-Update
PSME_00007989-RA No alias (at3g22840 : 149.0) Encodes an early light-inducible... 0.02 Orthogroups_2024-Update
PSME_00007990-RA No alias (at3g22840 : 162.0) Encodes an early light-inducible... 0.02 Orthogroups_2024-Update
Seita.2G053300.1 No alias LHC-related protein *(ELIP) 0.08 Orthogroups_2024-Update
Seita.2G053700.1 No alias LHC-related protein *(ELIP) 0.06 Orthogroups_2024-Update
Seita.2G053800.1 No alias LHC-related protein *(ELIP) 0.07 Orthogroups_2024-Update
Solyc09g082690 No alias superoxide dismutase 0.03 Orthogroups_2024-Update
Sopen09g031560 No alias Chlorophyll A-B binding protein 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003729 mRNA binding IEP Predicted GO
MF GO:0004144 diacylglycerol O-acyltransferase activity IEP Predicted GO
MF GO:0004470 malic enzyme activity IEP Predicted GO
MF GO:0004471 malate dehydrogenase (decarboxylating) (NAD+) activity IEP Predicted GO
MF GO:0004619 phosphoglycerate mutase activity IEP Predicted GO
MF GO:0005215 transporter activity IEP Predicted GO
CC GO:0005849 mRNA cleavage factor complex IEP Predicted GO
BP GO:0006006 glucose metabolic process IEP Predicted GO
BP GO:0006007 glucose catabolic process IEP Predicted GO
BP GO:0006378 mRNA polyadenylation IEP Predicted GO
BP GO:0006810 transport IEP Predicted GO
BP GO:0009690 cytokinin metabolic process IEP Predicted GO
BP GO:0010817 regulation of hormone levels IEP Predicted GO
MF GO:0015267 channel activity IEP Predicted GO
MF GO:0016411 acylglycerol O-acyltransferase activity IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016615 malate dehydrogenase activity IEP Predicted GO
MF GO:0016830 carbon-carbon lyase activity IEP Predicted GO
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Predicted GO
MF GO:0019139 cytokinin dehydrogenase activity IEP Predicted GO
BP GO:0019320 hexose catabolic process IEP Predicted GO
MF GO:0019842 vitamin binding IEP Predicted GO
MF GO:0022803 passive transmembrane transporter activity IEP Predicted GO
MF GO:0022857 transmembrane transporter activity IEP Predicted GO
MF GO:0030145 manganese ion binding IEP Predicted GO
MF GO:0030170 pyridoxal phosphate binding IEP Predicted GO
BP GO:0031123 RNA 3'-end processing IEP Predicted GO
BP GO:0031124 mRNA 3'-end processing IEP Predicted GO
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP Predicted GO
BP GO:0034754 cellular hormone metabolic process IEP Predicted GO
BP GO:0042445 hormone metabolic process IEP Predicted GO
BP GO:0043631 RNA polyadenylation IEP Predicted GO
BP GO:0043647 inositol phosphate metabolic process IEP Predicted GO
BP GO:0044281 small molecule metabolic process IEP Predicted GO
BP GO:0044282 small molecule catabolic process IEP Predicted GO
BP GO:0046164 alcohol catabolic process IEP Predicted GO
BP GO:0046174 polyol catabolic process IEP Predicted GO
BP GO:0046365 monosaccharide catabolic process IEP Predicted GO
BP GO:0046838 phosphorylated carbohydrate dephosphorylation IEP Predicted GO
BP GO:0046855 inositol phosphate dephosphorylation IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
MF GO:0050662 coenzyme binding IEP Predicted GO
BP GO:0051179 localization IEP Predicted GO
BP GO:0051234 establishment of localization IEP Predicted GO
BP GO:0055085 transmembrane transport IEP Predicted GO
MF GO:0070279 vitamin B6 binding IEP Predicted GO
BP GO:0071545 inositol phosphate catabolic process IEP Predicted GO
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP Predicted GO
BP GO:1901616 organic hydroxy compound catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 81 144
No external refs found!