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  5. Sobic.002G054000.1

Sobic.002G054000.1


Description : component *(uL4) of large ribosomal-subunit (LSU) proteome


Gene families : OG_42_0001916 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001916_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.002G054000.1
Cluster HCAA Clusters: Cluster_124

Target Alias Description ECC score Gene Family Method Actions
166994 No alias Ribosomal protein L4/L1 family 0.22 Orthogroups_2024-Update
At3g09630 No alias 60S ribosomal protein L4-1... 0.08 Orthogroups_2024-Update
At5g02870 No alias 60S ribosomal protein L4-2... 0.04 Orthogroups_2024-Update
Bradi1g05510 No alias Ribosomal protein L4/L1 family 0.31 Orthogroups_2024-Update
Bradi1g55510 No alias Ribosomal protein L4/L1 family 0.33 Orthogroups_2024-Update
Brara.A03522.1 No alias component *(uL4) of large ribosomal-subunit (LSU) proteome 0.32 Orthogroups_2024-Update
Brara.C00088.1 No alias component *(uL4) of large ribosomal-subunit (LSU) proteome 0.18 Orthogroups_2024-Update
Brara.C03264.1 No alias component *(uL4) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Brara.E03076.1 No alias component *(uL4) of large ribosomal-subunit (LSU) proteome 0.34 Orthogroups_2024-Update
Brara.J02849.1 No alias component *(uL4) of large ribosomal-subunit (LSU) proteome 0.33 Orthogroups_2024-Update
Cre09.g397697 No alias Ribosomal protein L4/L1 family 0.07 Orthogroups_2024-Update
GRMZM2G007695 No alias Ribosomal protein L4/L1 family 0.19 Orthogroups_2024-Update
GRMZM2G100403 No alias Ribosomal protein L4/L1 family 0.21 Orthogroups_2024-Update
Glyma.03G177400 No alias Ribosomal protein L4/L1 family 0.08 Orthogroups_2024-Update
Glyma.10G048600 No alias Ribosomal protein L4/L1 family 0.22 Orthogroups_2024-Update
Glyma.13G136400 No alias Ribosomal protein L4/L1 family 0.23 Orthogroups_2024-Update
HORVU4Hr1G075710.1 No alias component *(uL4) of large ribosomal-subunit (LSU) proteome 0.2 Orthogroups_2024-Update
HORVU5Hr1G105870.1 No alias component *(uL4) of large ribosomal-subunit (LSU) proteome 0.17 Orthogroups_2024-Update
Kfl00456_0100 kfl00456_0100_v1.1 (at3g09630 : 489.0) Ribosomal protein L4/L1 family;... 0.11 Orthogroups_2024-Update
MA_9991417g0010 No alias (at3g09630 : 255.0) Ribosomal protein L4/L1 family;... 0.02 Orthogroups_2024-Update
Mp4g20310.1 No alias component RPL4 of LSU proteome component 0.08 Orthogroups_2024-Update
PSME_00003145-RA No alias (at3g09630 : 579.0) Ribosomal protein L4/L1 family;... 0.04 Orthogroups_2024-Update
PSME_00003150-RA No alias (at3g09630 : 531.0) Ribosomal protein L4/L1 family;... 0.03 Orthogroups_2024-Update
Potri.016G084400 No alias Ribosomal protein L4/L1 family 0.09 Orthogroups_2024-Update
Potri.T159800 No alias Ribosomal protein L4/L1 family 0.09 Orthogroups_2024-Update
Pp1s10_102V6 No alias 60s ribosomal protein l4 0.14 Orthogroups_2024-Update
Pp1s10_369V6 No alias 60s ribosomal protein l4 0.03 Orthogroups_2024-Update
Pp1s18_113V6 No alias 60s ribosomal protein l4 0.05 Orthogroups_2024-Update
Pp1s40_305V6 No alias 60s ribosomal protein l4 0.14 Orthogroups_2024-Update
Seita.2G055300.1 No alias component *(uL4) of large ribosomal-subunit (LSU) proteome 0.32 Orthogroups_2024-Update
Seita.9G056000.1 No alias component *(uL4) of large ribosomal-subunit (LSU) proteome 0.09 Orthogroups_2024-Update
Solyc09g007250 No alias 60S ribosomal protein L4 (AHRD V3.3 *** RL4_PRUAR) 0.31 Orthogroups_2024-Update
Solyc10g084350 No alias 60S ribosomal L4 (AHRD V3.3 *** A0A0B0NGW3_GOSAR) 0.14 Orthogroups_2024-Update
Solyc10g086010 No alias 60S ribosomal L4 (AHRD V3.3 *** A0A0B0NGW3_GOSAR) 0.26 Orthogroups_2024-Update
Sopen09g002120 No alias Ribosomal protein L4/L1 family 0.25 Orthogroups_2024-Update
Sopen10g033800 No alias Ribosomal protein L4/L1 family 0.36 Orthogroups_2024-Update
Sopen10g035380 No alias Ribosomal protein L4/L1 family 0.27 Orthogroups_2024-Update
evm.model.contig_2049.5 No alias (at3g09630 : 394.0) Ribosomal protein L4/L1 family;... 0.15 Orthogroups_2024-Update
evm.model.tig00022075.53 No alias (at3g09630 : 404.0) Ribosomal protein L4/L1 family;... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA 16Dec
CC GO:0005840 ribosome IEA 16Dec
BP GO:0006412 translation IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
BP GO:0006325 chromatin organization IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
CC GO:0015934 large ribosomal subunit IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
BP GO:0022607 cellular component assembly IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
BP GO:0034622 cellular protein-containing complex assembly IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
BP GO:0043933 protein-containing complex subunit organization IEP Predicted GO
CC GO:0044391 ribosomal subunit IEP Predicted GO
BP GO:0065003 protein-containing complex assembly IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
InterPro domains Description Start Stop
IPR025755 Ribos_L4_C_dom 279 351
IPR002136 Ribosomal_L4/L1e 26 266
No external refs found!