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  5. Sobic.002G054200.1

Sobic.002G054200.1


Description : Unknown function


Gene families : OG_42_0000929 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000929_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.002G054200.1
Cluster HCAA Clusters: Cluster_89

Target Alias Description ECC score Gene Family Method Actions
Bradi1g14190 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Bradi2g38400 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Bradi2g38453 No alias rna processing factor 2 0.03 Orthogroups_2024-Update
GRMZM2G416201 No alias rna processing factor 2 0.03 Orthogroups_2024-Update
HORVU1Hr1G013810.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU1Hr1G014030.2 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.5G061100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.7G058000.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.7G058100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.8G161400.1 No alias Unknown function 0.06 Orthogroups_2024-Update
Seita.8G167800.1 No alias Unknown function 0.06 Orthogroups_2024-Update
Seita.9G204600.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.9G204800.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.005G024600.1 No alias Unknown function 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006732 coenzyme metabolic process IEP Predicted GO
BP GO:0006777 Mo-molybdopterin cofactor biosynthetic process IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
BP GO:0009108 coenzyme biosynthetic process IEP Predicted GO
CC GO:0019008 molybdopterin synthase complex IEP Predicted GO
BP GO:0019720 Mo-molybdopterin cofactor metabolic process IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
BP GO:0043545 molybdopterin cofactor metabolic process IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
BP GO:0051188 cofactor biosynthetic process IEP Predicted GO
BP GO:0051189 prosthetic group metabolic process IEP Predicted GO
MF GO:0051536 iron-sulfur cluster binding IEP Predicted GO
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Predicted GO
MF GO:0051540 metal cluster binding IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 393 422
IPR033443 PPR_long 56 223
IPR002885 Pentatricopeptide_repeat 565 613
IPR002885 Pentatricopeptide_repeat 320 369
IPR002885 Pentatricopeptide_repeat 428 474
IPR002885 Pentatricopeptide_repeat 495 543
IPR002885 Pentatricopeptide_repeat 250 299
IPR002885 Pentatricopeptide_repeat 615 647
No external refs found!