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  5. Sobic.002G115000.1

Sobic.002G115000.1


Description : component *(uL2) of large ribosomal-subunit (LSU) proteome


Gene families : OG_42_0001760 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001760_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.002G115000.1
Cluster HCAA Clusters: Cluster_203

Target Alias Description ECC score Gene Family Method Actions
170971 No alias Ribosomal protein L2 family 0.07 Orthogroups_2024-Update
A4A49_56239 No alias 60s ribosomal protein l8 0.07 Orthogroups_2024-Update
Bradi4g04120 No alias Ribosomal protein L2 family 0.1 Orthogroups_2024-Update
Brara.A00238.1 No alias component *(uL2) of large ribosomal-subunit (LSU) proteome 0.14 Orthogroups_2024-Update
Brara.G00216.1 No alias component *(uL2) of large ribosomal-subunit (LSU) proteome 0.15 Orthogroups_2024-Update
Brara.K01326.1 No alias component *(uL2) of large ribosomal-subunit (LSU) proteome 0.15 Orthogroups_2024-Update
Cre12.g535851 No alias Ribosomal protein L2 family 0.1 Orthogroups_2024-Update
Glyma.01G167300 No alias Ribosomal protein L2 family 0.1 Orthogroups_2024-Update
Glyma.02G049300 No alias Ribosomal protein L2 family 0.08 Orthogroups_2024-Update
Glyma.16G129700 No alias Ribosomal protein L2 family 0.03 Orthogroups_2024-Update
HORVU5Hr1G021730.2 No alias component *(uL2) of large ribosomal-subunit (LSU) proteome 0.13 Orthogroups_2024-Update
Mp7g01860.1 No alias component RPL8 of LSU proteome component 0.05 Orthogroups_2024-Update
Mp7g08730.1 No alias component RPL8 of LSU proteome component 0.05 Orthogroups_2024-Update
Potri.005G115700 No alias Ribosomal protein L2 family 0.03 Orthogroups_2024-Update
Potri.007G013100 No alias Ribosomal protein L2 family 0.05 Orthogroups_2024-Update
Pp1s37_247V6 No alias 60s ribosomal protein l2 0.1 Orthogroups_2024-Update
Seita.2G112000.1 No alias component *(uL2) of large ribosomal-subunit (LSU) proteome 0.11 Orthogroups_2024-Update
Seita.3G330100.1 No alias component *(uL2) of large ribosomal-subunit (LSU) proteome 0.09 Orthogroups_2024-Update
Solyc07g063890 No alias No description available 0.06 Orthogroups_2024-Update
Solyc10g006580 No alias ribosomal protein L2 0.06 Orthogroups_2024-Update
Solyc12g005330 No alias Ribosomal protein L2 family (AHRD V3.3 *** AT4G36130.1) 0.14 Orthogroups_2024-Update
Sopen07g032020 No alias Ribosomal Proteins L2, C-terminal domain 0.19 Orthogroups_2024-Update
Sopen10g002530 No alias Ribosomal Proteins L2, C-terminal domain 0.12 Orthogroups_2024-Update
Sopen12g001310 No alias Ribosomal Proteins L2, C-terminal domain 0.09 Orthogroups_2024-Update
evm.model.contig_2057.10 No alias (at4g36130 : 380.0) Ribosomal protein L2 family;... 0.19 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA 16Dec
CC GO:0005840 ribosome IEA 16Dec
BP GO:0006412 translation IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Predicted GO
CC GO:0005744 TIM23 mitochondrial import inner membrane translocase complex IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0006839 mitochondrial transport IEP Predicted GO
BP GO:0006886 intracellular protein transport IEP Predicted GO
BP GO:0008104 protein localization IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
CC GO:0015934 large ribosomal subunit IEP Predicted GO
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Predicted GO
BP GO:0017038 protein import IEP Predicted GO
BP GO:0030150 protein import into mitochondrial matrix IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
BP GO:0033036 macromolecule localization IEP Predicted GO
BP GO:0033365 protein localization to organelle IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
CC GO:0044391 ribosomal subunit IEP Predicted GO
CC GO:0044455 mitochondrial membrane part IEP Predicted GO
BP GO:0044743 protein transmembrane import into intracellular organelle IEP Predicted GO
BP GO:0045184 establishment of protein localization IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
BP GO:0065002 intracellular protein transmembrane transport IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
BP GO:0070585 protein localization to mitochondrion IEP Predicted GO
BP GO:0071705 nitrogen compound transport IEP Predicted GO
BP GO:0071806 protein transmembrane transport IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
BP GO:0072594 establishment of protein localization to organelle IEP Predicted GO
BP GO:0072655 establishment of protein localization to mitochondrion IEP Predicted GO
CC GO:0098800 inner mitochondrial membrane protein complex IEP Predicted GO
BP GO:1990542 mitochondrial transmembrane transport IEP Predicted GO
InterPro domains Description Start Stop
IPR022669 Ribosomal_L2_C 98 225
IPR022666 Rbsml_prot_L2_RNA-bd_dom 13 90
No external refs found!