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  5. Sobic.002G131700.1

Sobic.002G131700.1


Description : plastidial ribonucleoprotein *(CP31)


Gene families : OG_42_0004215 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004215_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.002G131700.1
Cluster HCAA Clusters: Cluster_1

Target Alias Description ECC score Gene Family Method Actions
A4A49_33050 No alias 31 kda ribonucleoprotein, chloroplastic 0.04 Orthogroups_2024-Update
Bradi4g38260 No alias 31-kDa RNA binding protein 0.03 Orthogroups_2024-Update
GRMZM2G158462 No alias 31-kDa RNA binding protein 0.02 Orthogroups_2024-Update
Glyma.04G190100 No alias 31-kDa RNA binding protein 0.06 Orthogroups_2024-Update
Glyma.06G175400 No alias 31-kDa RNA binding protein 0.06 Orthogroups_2024-Update
Glyma.17G125700 No alias 31-kDa RNA binding protein 0.04 Orthogroups_2024-Update
HORVU7Hr1G058940.2 No alias plastidial ribonucleoprotein *(CP31) 0.03 Orthogroups_2024-Update
Potri.012G090200 No alias 31-kDa RNA binding protein 0.03 Orthogroups_2024-Update
Potri.015G086500 No alias 31-kDa RNA binding protein 0.04 Orthogroups_2024-Update
Seita.2G130500.1 No alias plastidial ribonucleoprotein *(CP31) 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0000774 adenyl-nucleotide exchange factor activity IEP Predicted GO
CC GO:0000786 nucleosome IEP Predicted GO
MF GO:0003678 DNA helicase activity IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
MF GO:0008483 transaminase activity IEP Predicted GO
MF GO:0008987 quinolinate synthetase A activity IEP Predicted GO
BP GO:0009435 NAD biosynthetic process IEP Predicted GO
MF GO:0016730 oxidoreductase activity, acting on iron-sulfur proteins as donors IEP Predicted GO
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Predicted GO
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Predicted GO
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Predicted GO
BP GO:0019674 NAD metabolic process IEP Predicted GO
MF GO:0019842 vitamin binding IEP Predicted GO
MF GO:0030976 thiamine pyrophosphate binding IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
MF GO:0042802 identical protein binding IEP Predicted GO
MF GO:0042803 protein homodimerization activity IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
MF GO:0051087 chaperone binding IEP Predicted GO
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Predicted GO
MF GO:0060590 ATPase regulator activity IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
MF GO:1901681 sulfur compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR000504 RRM_dom 212 282
IPR000504 RRM_dom 118 187
No external refs found!