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  5. Sobic.002G161800.1

Sobic.002G161800.1


Description : GARP subgroup PHL transcription factor


Gene families : OG_42_0000021 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000021_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.002G161800.1
Cluster HCAA Clusters: Cluster_140

Target Alias Description ECC score Gene Family Method Actions
At1g79430 No alias Myb family transcription factor APL... 0.04 Orthogroups_2024-Update
At5g18240 No alias Myb-related protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FK47] 0.04 Orthogroups_2024-Update
Bradi3g00550 No alias Homeodomain-like superfamily protein 0.02 Orthogroups_2024-Update
Brara.A00862.1 No alias GARP subgroup PHL transcription factor & transcription... 0.03 Orthogroups_2024-Update
Brara.C03930.1 No alias transcription factor *(PHR1) & GARP subgroup PHL... 0.02 Orthogroups_2024-Update
Brara.G03665.1 No alias regulatory protein *(FE) of florigen biosynthesis & GARP... 0.03 Orthogroups_2024-Update
GRMZM2G052544 No alias Homeodomain-like superfamily protein 0.02 Orthogroups_2024-Update
HORVU5Hr1G060310.22 No alias KANADI-type transcription factor 0.03 Orthogroups_2024-Update
LOC_Os07g25710 No alias myb-like DNA-binding domain containing protein, expressed 0.03 Orthogroups_2024-Update
MA_1432g0010 No alias (at3g13040 : 86.3) myb-like HTH transcriptional... 0.03 Orthogroups_2024-Update
MA_21538g0020 No alias (at3g04030 : 219.0) Homeodomain-like superfamily... 0.02 Orthogroups_2024-Update
Pp1s25_131V6 No alias F18A5.30; myb family transcription factor [Arabidopsis thaliana] 0.02 Orthogroups_2024-Update
Seita.2G118400.1 No alias GARP subgroup PHL transcription factor & transcription... 0.03 Orthogroups_2024-Update
Seita.3G195600.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.6G120200.1 No alias GARP subgroup PHL transcription factor 0.02 Orthogroups_2024-Update
Solyc08g005260 No alias Myb family transcription factor family protein (AHRD... 0.04 Orthogroups_2024-Update
Solyc11g011770 No alias Myb family transcription factor-like protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Sopen06g016880 No alias Myb-like DNA-binding domain 0.04 Orthogroups_2024-Update
Sopen09g034770 No alias MYB-CC type transfactor, LHEQLE motif 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000159 protein phosphatase type 2A complex IEP Predicted GO
BP GO:0000966 RNA 5'-end processing IEP Predicted GO
BP GO:0001682 tRNA 5'-leader removal IEP Predicted GO
BP GO:0008033 tRNA processing IEP Predicted GO
MF GO:0008170 N-methyltransferase activity IEP Predicted GO
MF GO:0008276 protein methyltransferase activity IEP Predicted GO
CC GO:0008287 protein serine/threonine phosphatase complex IEP Predicted GO
MF GO:0016278 lysine N-methyltransferase activity IEP Predicted GO
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Predicted GO
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Predicted GO
MF GO:0019208 phosphatase regulator activity IEP Predicted GO
MF GO:0019888 protein phosphatase regulator activity IEP Predicted GO
CC GO:0030677 ribonuclease P complex IEP Predicted GO
BP GO:0034471 ncRNA 5'-end processing IEP Predicted GO
MF GO:0042054 histone methyltransferase activity IEP Predicted GO
BP GO:0099116 tRNA 5'-end processing IEP Predicted GO
CC GO:1902494 catalytic complex IEP Predicted GO
CC GO:1902555 endoribonuclease complex IEP Predicted GO
CC GO:1903293 phosphatase complex IEP Predicted GO
CC GO:1905348 endonuclease complex IEP Predicted GO
InterPro domains Description Start Stop
IPR025756 Myb_CC_LHEQLE 132 177
IPR001005 SANT/Myb 48 98
No external refs found!