Sobic.002G175100.1

Description : component *(eL42) of large ribosomal-subunit (LSU) proteome

Gene families : OG_42_0001870 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001870_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor: Sobic.002G175100.1
Cluster	HCAA Clusters: Cluster_135

Target	Alias	Description	ECC score	Gene Family Method
161986	No alias	Zinc-binding ribosomal protein family protein	0.1	Orthogroups_2024-Update
A4A49_42104	No alias	60s ribosomal protein l44	0.06	Orthogroups_2024-Update
A4A49_63762	No alias	60s ribosomal protein l44	0.03	Orthogroups_2024-Update
At3g23390	No alias	60S ribosomal protein L36a...	0.03	Orthogroups_2024-Update
At4g14320	No alias	Zinc-binding ribosomal protein family protein...	0.03	Orthogroups_2024-Update
Bradi1g26010	No alias	Zinc-binding ribosomal protein family protein	0.03	Orthogroups_2024-Update
Bradi1g28750	No alias	Zinc-binding ribosomal protein family protein	0.06	Orthogroups_2024-Update
Brara.A02648.1	No alias	component *(eL42) of large ribosomal-subunit (LSU) proteome	0.1	Orthogroups_2024-Update
Brara.C03915.1	No alias	component *(eL42) of large ribosomal-subunit (LSU) proteome	0.04	Orthogroups_2024-Update
Brara.D00648.1	No alias	component *(eL42) of large ribosomal-subunit (LSU) proteome	0.03	Orthogroups_2024-Update
Brara.G00538.1	No alias	component *(eL42) of large ribosomal-subunit (LSU) proteome	0.06	Orthogroups_2024-Update
Brara.H01878.1	No alias	component *(eL42) of large ribosomal-subunit (LSU) proteome	0.04	Orthogroups_2024-Update
Cre06.g310700	No alias	Zinc-binding ribosomal protein family protein	0.06	Orthogroups_2024-Update
Glyma.05G120700	No alias	Zinc-binding ribosomal protein family protein	0.03	Orthogroups_2024-Update
Glyma.08G075500	No alias	Zinc-binding ribosomal protein family protein	0.04	Orthogroups_2024-Update
Glyma.08G181300	No alias	Zinc-binding ribosomal protein family protein	0.03	Orthogroups_2024-Update
Glyma.15G051000	No alias	Zinc-binding ribosomal protein family protein	0.03	Orthogroups_2024-Update
HORVU5Hr1G081590.1	No alias	component *(eL42) of large ribosomal-subunit (LSU) proteome	0.05	Orthogroups_2024-Update
HORVU5Hr1G101600.1	No alias	component *(eL42) of large ribosomal-subunit (LSU) proteome	0.08	Orthogroups_2024-Update
HORVU7Hr1G104300.1	No alias	component *(eL42) of large ribosomal-subunit (LSU) proteome	0.07	Orthogroups_2024-Update
Kfl00989_0050	kfl00989_0050_v1.1	(q96499\|rl44_goshi : 200.0) 60S ribosomal protein L44 -...	0.03	Orthogroups_2024-Update
MA_10427098g0010	No alias	(at4g14320 : 163.0) Zinc-binding ribosomal protein...	0.04	Orthogroups_2024-Update
MA_99845g0010	No alias	(at4g14320 : 160.0) Zinc-binding ribosomal protein...	0.05	Orthogroups_2024-Update
Mp2g25770.1	No alias	component RPL36a of LSU proteome component	0.05	Orthogroups_2024-Update
PSME_00003754-RA	No alias	(at4g14320 : 164.0) Zinc-binding ribosomal protein...	0.1	Orthogroups_2024-Update
Potri.010G251500	No alias	Zinc-binding ribosomal protein family protein	0.06	Orthogroups_2024-Update
Pp1s115_63V6	No alias	60s ribosomal protein l44	0.08	Orthogroups_2024-Update
Pp1s22_326V6	No alias	60s ribosomal protein l44	0.11	Orthogroups_2024-Update
Pp1s2_415V6	No alias	60s ribosomal protein l44	0.07	Orthogroups_2024-Update
Pp1s6_198V6	No alias	60s ribosomal protein l44	0.09	Orthogroups_2024-Update
Pp1s74_73V6	No alias	60s ribosomal protein l44	0.09	Orthogroups_2024-Update
Seita.9G438600.1	No alias	component *(eL42) of large ribosomal-subunit (LSU) proteome	0.11	Orthogroups_2024-Update
Solyc03g112850	No alias	60S ribosomal protein L44 (AHRD V3.3 *** RL44_GOSHI)	0.08	Orthogroups_2024-Update
Solyc06g071530	No alias	60S ribosomal protein L44 (AHRD V3.3 *** RL44_GOSHI)	0.09	Orthogroups_2024-Update
Sopen03g031930	No alias	Ribosomal protein L44	0.1	Orthogroups_2024-Update
Sopen06g027820	No alias	Ribosomal protein L44	0.09	Orthogroups_2024-Update
evm.model.contig_2517.1	No alias	(at4g14320 : 166.0) Zinc-binding ribosomal protein...	0.09	Orthogroups_2024-Update
evm.model.tig00000489.11	No alias	(q96499\|rl44_goshi : 166.0) 60S ribosomal protein L44 -...	0.04	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	16Dec
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	16Dec
BP	GO:0006412	translation	IEA	16Dec
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000049	tRNA binding	IEP	Predicted GO
MF	GO:0001882	nucleoside binding	IEP	Predicted GO
MF	GO:0001883	purine nucleoside binding	IEP	Predicted GO
MF	GO:0003676	nucleic acid binding	IEP	Predicted GO
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0003746	translation elongation factor activity	IEP	Predicted GO
MF	GO:0003924	GTPase activity	IEP	Predicted GO
MF	GO:0004017	adenylate kinase activity	IEP	Predicted GO
MF	GO:0004175	endopeptidase activity	IEP	Predicted GO
MF	GO:0004190	aspartic-type endopeptidase activity	IEP	Predicted GO
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	Predicted GO
MF	GO:0004827	proline-tRNA ligase activity	IEP	Predicted GO
MF	GO:0005525	GTP binding	IEP	Predicted GO
CC	GO:0005789	endoplasmic reticulum membrane	IEP	Predicted GO
CC	GO:0005839	proteasome core complex	IEP	Predicted GO
BP	GO:0006082	organic acid metabolic process	IEP	Predicted GO
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Predicted GO
BP	GO:0006310	DNA recombination	IEP	Predicted GO
BP	GO:0006399	tRNA metabolic process	IEP	Predicted GO
BP	GO:0006414	translational elongation	IEP	Predicted GO
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	Predicted GO
BP	GO:0006433	prolyl-tRNA aminoacylation	IEP	Predicted GO
BP	GO:0006487	protein N-linked glycosylation	IEP	Predicted GO
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	Predicted GO
BP	GO:0006520	cellular amino acid metabolic process	IEP	Predicted GO
MF	GO:0008135	translation factor activity, RNA binding	IEP	Predicted GO
MF	GO:0008237	metallopeptidase activity	IEP	Predicted GO
CC	GO:0008250	oligosaccharyltransferase complex	IEP	Predicted GO
MF	GO:0009982	pseudouridine synthase activity	IEP	Predicted GO
BP	GO:0016070	RNA metabolic process	IEP	Predicted GO
MF	GO:0016462	pyrophosphatase activity	IEP	Predicted GO
MF	GO:0016776	phosphotransferase activity, phosphate group as acceptor	IEP	Predicted GO
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	Predicted GO
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	Predicted GO
MF	GO:0016874	ligase activity	IEP	Predicted GO
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	Predicted GO
MF	GO:0017111	nucleoside-triphosphatase activity	IEP	Predicted GO
MF	GO:0019001	guanyl nucleotide binding	IEP	Predicted GO
MF	GO:0019205	nucleobase-containing compound kinase activity	IEP	Predicted GO
BP	GO:0019752	carboxylic acid metabolic process	IEP	Predicted GO
CC	GO:0019773	proteasome core complex, alpha-subunit complex	IEP	Predicted GO
BP	GO:0019941	modification-dependent protein catabolic process	IEP	Predicted GO
MF	GO:0032549	ribonucleoside binding	IEP	Predicted GO
MF	GO:0032550	purine ribonucleoside binding	IEP	Predicted GO
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Predicted GO
BP	GO:0034660	ncRNA metabolic process	IEP	Predicted GO
BP	GO:0043038	amino acid activation	IEP	Predicted GO
BP	GO:0043039	tRNA aminoacylation	IEP	Predicted GO
BP	GO:0043436	oxoacid metabolic process	IEP	Predicted GO
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	Predicted GO
BP	GO:0044265	cellular macromolecule catabolic process	IEP	Predicted GO
CC	GO:0044432	endoplasmic reticulum part	IEP	Predicted GO
MF	GO:0050145	nucleoside monophosphate kinase activity	IEP	Predicted GO
BP	GO:0051603	proteolysis involved in cellular protein catabolic process	IEP	Predicted GO
MF	GO:0070001	aspartic-type peptidase activity	IEP	Predicted GO
BP	GO:0090304	nucleic acid metabolic process	IEP	Predicted GO
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Predicted GO
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR000552	Ribosomal_L44e	19	94

External Links

No external refs found!

Sobic.002G175100.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation