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  5. Sobic.002G178700.2

Sobic.002G178700.2


Description : Unknown function


Gene families : OG_42_0000048 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000048_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.002G178700.2
Cluster HCAA Clusters: Cluster_157

Target Alias Description ECC score Gene Family Method Actions
At5g20620 No alias Polyubiquitin 4 [Source:UniProtKB/Swiss-Prot;Acc:P0CH32] 0.01 Orthogroups_2024-Update
GRMZM2G419891 No alias polyubiquitin 10 0.02 Orthogroups_2024-Update
HORVU4Hr1G001170.5 No alias component *(eL40) of large ribosomal-subunit (LSU) proteome 0.01 Orthogroups_2024-Update
HORVU6Hr1G029050.1 No alias RUB ubiquitin-fold protein & UBQ ubiquitin-fold protein 0.02 Orthogroups_2024-Update
LOC_Os06g46770 No alias ubiquitin family protein, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os07g30640 No alias ubiquitin fusion protein, putative, expressed 0.02 Orthogroups_2024-Update
MA_371071g0010 No alias (at5g03240 : 517.0) encodes ubiquitin that is attached... 0.02 Orthogroups_2024-Update
MA_41251g0030 No alias (at4g05320 : 844.0) One of five polyubiquitin genes in... 0.02 Orthogroups_2024-Update
MA_9420337g0010 No alias (at5g03240 : 357.0) encodes ubiquitin that is attached... 0.02 Orthogroups_2024-Update
Potri.004G021500 No alias polyubiquitin 10 0.02 Orthogroups_2024-Update
Seita.3G398300.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.4G259900.1 No alias UBQ ubiquitin-fold protein 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA 16Dec
MF GO:0005515 protein binding IEA 16Dec
CC GO:0005840 ribosome IEA 16Dec
BP GO:0006412 translation IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0004601 peroxidase activity IEP Predicted GO
BP GO:0006979 response to oxidative stress IEP Predicted GO
MF GO:0016209 antioxidant activity IEP Predicted GO
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Predicted GO
InterPro domains Description Start Stop
IPR001975 Ribosomal_L40e 72 121
IPR000626 Ubiquitin_dom 21 59
No external refs found!