Sobic.002G179800.1

Description : mTERF-type transcription factor

Gene families : OG_42_0000078 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000078_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor: Sobic.002G179800.1
Cluster	HCAA Clusters: Cluster_89

Target	Alias	Description	ECC score	Gene Family Method
444400	No alias	plastid transcriptionally active 15	0.04	Orthogroups_2024-Update
A4A49_33929	No alias	transcription termination factor mterf8, chloroplastic	0.01	Orthogroups_2024-Update
At1g62010	No alias	F8K4.20 protein [Source:UniProtKB/TrEMBL;Acc:O80705]	0.04	Orthogroups_2024-Update
At1g62490	No alias	Mitochondrial transcription termination factor family...	0.02	Orthogroups_2024-Update
At5g07900	No alias	Mitochondrial transcription termination factor family...	0.02	Orthogroups_2024-Update
At5g64950	No alias	Emb [Source:UniProtKB/TrEMBL;Acc:Q9LV83]	0.05	Orthogroups_2024-Update
Bradi1g16160	No alias	Mitochondrial transcription termination factor family protein	0.06	Orthogroups_2024-Update
Bradi1g45338	No alias	Mitochondrial transcription termination factor family protein	0.01	Orthogroups_2024-Update
Bradi3g00830	No alias	Mitochondrial transcription termination factor family protein	0.04	Orthogroups_2024-Update
Bradi4g23197	No alias	Mitochondrial transcription termination factor family protein	0.02	Orthogroups_2024-Update
Brara.A02580.1	No alias	mTERF-type transcription factor	0.06	Orthogroups_2024-Update
Brara.C04011.1	No alias	mTERF-type transcription factor	0.03	Orthogroups_2024-Update
Brara.E03356.1	No alias	mTERF-type transcription factor	0.02	Orthogroups_2024-Update
Brara.G03646.1	No alias	mTERF-type transcription factor	0.03	Orthogroups_2024-Update
Brara.I01450.1	No alias	mTERF-type transcription factor	0.02	Orthogroups_2024-Update
Brara.I01477.1	No alias	mTERF-type transcription factor	0.03	Orthogroups_2024-Update
Glyma.08G306100	No alias	Mitochondrial transcription termination factor family protein	0.04	Orthogroups_2024-Update
Glyma.09G046000	No alias	Mitochondrial transcription termination factor family protein	0.02	Orthogroups_2024-Update
Glyma.15G153150	No alias	Mitochondrial transcription termination factor family protein	0.04	Orthogroups_2024-Update
Glyma.15G153400	No alias	Mitochondrial transcription termination factor family protein	0.02	Orthogroups_2024-Update
Glyma.16G085500	No alias	Mitochondrial transcription termination factor family protein	0.01	Orthogroups_2024-Update
Glyma.18G112400	No alias	Mitochondrial transcription termination factor family protein	0.05	Orthogroups_2024-Update
HORVU2Hr1G024310.1	No alias	mTERF-type transcription factor	0.1	Orthogroups_2024-Update
HORVU2Hr1G116050.1	No alias	mTERF-type transcription factor	0.03	Orthogroups_2024-Update
HORVU5Hr1G056910.1	No alias	mTERF-type transcription factor	0.04	Orthogroups_2024-Update
HORVU6Hr1G003570.23	No alias	mTERF-type transcription factor	0.04	Orthogroups_2024-Update
HORVU6Hr1G005710.1	No alias	mTERF-type transcription factor	0.04	Orthogroups_2024-Update
HORVU6Hr1G075340.1	No alias	mTERF-type transcription factor	0.09	Orthogroups_2024-Update
HORVU7Hr1G081400.3	No alias	mTERF-type transcription factor	0.05	Orthogroups_2024-Update
LOC_Os02g51450	No alias	mTERF family protein, expressed	0.01	Orthogroups_2024-Update
LOC_Os04g54510	No alias	mTERF family protein, expressed	0.03	Orthogroups_2024-Update
LOC_Os05g34160	No alias	mTERF domain containing protein, expressed	0.02	Orthogroups_2024-Update
LOC_Os07g24090	No alias	mTERF domain containing protein, expressed	0.01	Orthogroups_2024-Update
LOC_Os08g40710	No alias	retrotransposon protein, putative, unclassified, expressed	0.02	Orthogroups_2024-Update
LOC_Os11g09990	No alias	mTERF family protein, expressed	0.03	Orthogroups_2024-Update
LOC_Os11g10000	No alias	mTERF family protein, expressed	0.01	Orthogroups_2024-Update
MA_178046g0010	No alias	(at5g64950 : 104.0) Mitochondrial transcription...	0.04	Orthogroups_2024-Update
MA_26585g0010	No alias	(at5g64950 : 83.2) Mitochondrial transcription...	0.06	Orthogroups_2024-Update
MA_804585g0010	No alias	(at5g64950 : 91.3) Mitochondrial transcription...	0.04	Orthogroups_2024-Update
PSME_00000445-RA	No alias	(at5g64950 : 86.7) Mitochondrial transcription...	0.01	Orthogroups_2024-Update
PSME_00006649-RA	No alias	(at5g64950 : 93.2) Mitochondrial transcription...	0.03	Orthogroups_2024-Update
PSME_00019792-RA	No alias	(at1g79220 : 99.0) Mitochondrial transcription...	0.03	Orthogroups_2024-Update
PSME_00020293-RA	No alias	(at5g23930 : 110.0) Mitochondrial transcription...	0.01	Orthogroups_2024-Update
PSME_00023020-RA	No alias	(at1g79220 : 108.0) Mitochondrial transcription...	0.02	Orthogroups_2024-Update
PSME_00030142-RA	No alias	(at5g64950 : 89.4) Mitochondrial transcription...	0.06	Orthogroups_2024-Update
PSME_00032600-RA	No alias	(at5g64950 : 90.5) Mitochondrial transcription...	0.01	Orthogroups_2024-Update
PSME_00042470-RA	No alias	(at1g79220 : 96.3) Mitochondrial transcription...	0.02	Orthogroups_2024-Update
PSME_00049593-RA	No alias	(at5g64950 : 87.0) Mitochondrial transcription...	0.01	Orthogroups_2024-Update
PSME_00056046-RA	No alias	no hits & (original description: no original description)	0.02	Orthogroups_2024-Update
PSME_00056135-RA	No alias	(at1g79220 : 100.0) Mitochondrial transcription...	0.02	Orthogroups_2024-Update
PSME_00056620-RA	No alias	(at1g79220 : 139.0) Mitochondrial transcription...	0.09	Orthogroups_2024-Update
Potri.001G034500	No alias	Mitochondrial transcription termination factor family protein	0.02	Orthogroups_2024-Update
Potri.003G190300	No alias	Mitochondrial transcription termination factor family protein	0.01	Orthogroups_2024-Update
Potri.003G190400	No alias	Mitochondrial transcription termination factor family protein	0.02	Orthogroups_2024-Update
Potri.003G190700	No alias	Mitochondrial transcription termination factor family protein	0.01	Orthogroups_2024-Update
Potri.008G216200	No alias	Mitochondrial transcription termination factor family protein	0.01	Orthogroups_2024-Update
Potri.012G046700	No alias	Mitochondrial transcription termination factor family protein	0.02	Orthogroups_2024-Update
Potri.015G038400	No alias	Mitochondrial transcription termination factor family protein	0.04	Orthogroups_2024-Update
Pp1s219_66V6	No alias	No description available	0.04	Orthogroups_2024-Update
Seita.4G092000.1	No alias	mTERF-type transcription factor	0.11	Orthogroups_2024-Update
Seita.4G094400.1	No alias	mTERF-type transcription factor	0.11	Orthogroups_2024-Update
Seita.4G095000.1	No alias	mTERF-type transcription factor	0.18	Orthogroups_2024-Update
Seita.4G095600.1	No alias	mTERF-type transcription factor	0.03	Orthogroups_2024-Update
Seita.4G095900.1	No alias	mTERF-type transcription factor	0.01	Orthogroups_2024-Update
Seita.6G130600.1	No alias	mTERF-type transcription factor	0.09	Orthogroups_2024-Update
Sobic.007G114700.3	No alias	mTERF-type transcription factor	0.02	Orthogroups_2024-Update
Sobic.009G131550.1	No alias	mTERF-type transcription factor	0.03	Orthogroups_2024-Update
Solyc02g067960	No alias	Mitochondrial transcription termination factor family...	0.04	Orthogroups_2024-Update
Solyc04g072550	No alias	Transcription termination factor, mitochondrial (AHRD...	0.03	Orthogroups_2024-Update
Solyc11g022600	No alias	Mitochondrial transcription termination factor-like...	0.01	Orthogroups_2024-Update
Solyc12g010650	No alias	Mitochondrial transcription termination factor family...	0.01	Orthogroups_2024-Update
Sopen04g005870	No alias	mTERF	0.02	Orthogroups_2024-Update
Sopen04g028690	No alias	mTERF	0.03	Orthogroups_2024-Update
Sopen04g028710	No alias	mTERF	0.04	Orthogroups_2024-Update
Sopen04g028730	No alias	mTERF	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	IEA	16Dec
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	16Dec
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0005509	calcium ion binding	IEP	Predicted GO
BP	GO:0016043	cellular component organization	IEP	Predicted GO
MF	GO:0030599	pectinesterase activity	IEP	Predicted GO
BP	GO:0042545	cell wall modification	IEP	Predicted GO
MF	GO:0043169	cation binding	IEP	Predicted GO
BP	GO:0045229	external encapsulating structure organization	IEP	Predicted GO
MF	GO:0046872	metal ion binding	IEP	Predicted GO
MF	GO:0052689	carboxylic ester hydrolase activity	IEP	Predicted GO
BP	GO:0071554	cell wall organization or biogenesis	IEP	Predicted GO
BP	GO:0071555	cell wall organization	IEP	Predicted GO
BP	GO:0071840	cellular component organization or biogenesis	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR003690	MTERF	90	354

External Links

No external refs found!

Sobic.002G179800.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation