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  5. Sobic.002G189800.2

Sobic.002G189800.2


Description : Unknown function


Gene families : OG_42_0000003 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.002G189800.2
Cluster HCAA Clusters: Cluster_82

Target Alias Description ECC score Gene Family Method Actions
121181 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
39820 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
A4A49_18667 No alias ring-h2 finger protein atl18 0.04 Orthogroups_2024-Update
A4A49_36944 No alias ring-h2 finger protein atl52 0.04 Orthogroups_2024-Update
At4g09100 No alias RING-H2 finger protein ATL39... 0.03 Orthogroups_2024-Update
At4g40070 No alias RING-H2 finger protein ATL32... 0.03 Orthogroups_2024-Update
At5g01880 No alias RING-H2 finger protein ATL74... 0.03 Orthogroups_2024-Update
At5g05280 No alias RING-H2 finger protein ATL73... 0.03 Orthogroups_2024-Update
At5g17600 No alias RING-H2 finger protein ATL52... 0.03 Orthogroups_2024-Update
Bradi1g29611 No alias RING-H2 finger A3A 0.03 Orthogroups_2024-Update
Brara.B02267.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.C01806.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.E01886.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
Brara.F00390.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
Brara.H01260.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.K00768.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
GRMZM2G171277 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Glyma.04G181300 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
HORVU0Hr1G016510.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
HORVU6Hr1G091610.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
LOC_Os05g39940 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.03 Orthogroups_2024-Update
LOC_Os09g36500 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
MA_10432957g0010 No alias no hits & (original description: no original description) 0.05 Orthogroups_2024-Update
Potri.014G076800 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Pp1s14_164V6 No alias zinc finger (c3hc4-type ring finger) family protein 0.03 Orthogroups_2024-Update
Seita.9G373200.1 No alias Unknown function 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003678 DNA helicase activity IEP Predicted GO
MF GO:0004556 alpha-amylase activity IEP Predicted GO
BP GO:0006260 DNA replication IEP Predicted GO
BP GO:0006950 response to stress IEP Predicted GO
MF GO:0016160 amylase activity IEP Predicted GO
MF GO:0043138 3'-5' DNA helicase activity IEP Predicted GO
MF GO:0051087 chaperone binding IEP Predicted GO
MF GO:0140097 catalytic activity, acting on DNA IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 182 232
No external refs found!