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  5. Sobic.002G190500.1

Sobic.002G190500.1


Description : alpha amylase


Gene families : OG_42_0000605 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000605_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.002G190500.1
Cluster HCAA Clusters: Cluster_176

Target Alias Description ECC score Gene Family Method Actions
404058 No alias alpha-amylase-like 0.03 Orthogroups_2024-Update
GRMZM2G103055 No alias alpha-amylase-like 0.03 Orthogroups_2024-Update
Glyma.14G222600 No alias alpha-amylase-like 2 0.03 Orthogroups_2024-Update
HORVU0Hr1G032850.5 No alias alpha amylase 0.02 Orthogroups_2024-Update
MA_8527195g0010 No alias (at1g69830 : 135.0) Encodes a plastid-localized... 0.03 Orthogroups_2024-Update
PSME_00011482-RA No alias (p27933|amy3d_orysa : 429.0) Alpha-amylase isozyme 3D... 0.03 Orthogroups_2024-Update
PSME_00034631-RA No alias (p27933|amy3d_orysa : 495.0) Alpha-amylase isozyme 3D... 0.03 Orthogroups_2024-Update
Potri.002G014300 No alias alpha-amylase-like 2 0.03 Orthogroups_2024-Update
Pp1s13_335V6 No alias pentatricopeptide repeat-containing 0.04 Orthogroups_2024-Update
Pp1s526_11V6 No alias glycoside hydrolase family 13 protein 0.02 Orthogroups_2024-Update
Seita.8G179800.1 No alias alpha amylase 0.03 Orthogroups_2024-Update
Sobic.002G225600.2 No alias alpha amylase 0.03 Orthogroups_2024-Update
Sobic.002G225650.1 No alias alpha amylase 0.03 Orthogroups_2024-Update
Sobic.004G309000.1 No alias alpha amylase 0.04 Orthogroups_2024-Update
Sobic.007G156400.1 No alias alpha amylase 0.04 Orthogroups_2024-Update
Solyc02g066950 No alias Alpha-amylase, putative (AHRD V3.3 *** B9SJF1_RICCO) 0.04 Orthogroups_2024-Update
Solyc04g078930 No alias Alpha-amylase (AHRD V3.3 *** K4BUX7_SOLLC) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004556 alpha-amylase activity IEA 16Dec
MF GO:0005509 calcium ion binding IEA 16Dec
BP GO:0005975 carbohydrate metabolic process IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0004672 protein kinase activity IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0006468 protein phosphorylation IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR006047 Glyco_hydro_13_cat_dom 45 108
IPR012850 A-amylase_bs_C 344 402
No external refs found!