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  5. Sobic.002G198400.1

Sobic.002G198400.1


Description : TCP-type transcription factor


Gene families : OG_42_0000203 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000203_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.002G198400.1
Cluster HCAA Clusters: Cluster_298

Target Alias Description ECC score Gene Family Method Actions
GRMZM2G015037 No alias TCP family transcription factor 4 0.02 Orthogroups_2024-Update
Glyma.08G247300 No alias plastid transcription factor 1 0.02 Orthogroups_2024-Update
Potri.015G050500 No alias TCP family transcription factor 0.02 Orthogroups_2024-Update
Sobic.002G035500.1 No alias TCP-type transcription factor 0.01 Orthogroups_2024-Update
Sobic.003G299700.1 No alias TCP-type transcription factor 0.02 Orthogroups_2024-Update
Solyc08g048390 No alias TCP transcription factor 24 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0003006 developmental process involved in reproduction IEP Predicted GO
MF GO:0004451 isocitrate lyase activity IEP Predicted GO
MF GO:0004512 inositol-3-phosphate synthase activity IEP Predicted GO
BP GO:0006020 inositol metabolic process IEP Predicted GO
BP GO:0006021 inositol biosynthetic process IEP Predicted GO
BP GO:0009790 embryo development IEP Predicted GO
BP GO:0009793 embryo development ending in seed dormancy IEP Predicted GO
MF GO:0016833 oxo-acid-lyase activity IEP Predicted GO
MF GO:0016872 intramolecular lyase activity IEP Predicted GO
BP GO:0046165 alcohol biosynthetic process IEP Predicted GO
BP GO:0046173 polyol biosynthetic process IEP Predicted GO
MF GO:0050660 flavin adenine dinucleotide binding IEP Predicted GO
BP GO:1901617 organic hydroxy compound biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR017887 TF_TCP_subgr 104 168
No external refs found!