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  5. Sobic.002G203800.1

Sobic.002G203800.1


Description : subfamily ABCG transporter


Gene families : OG_42_0000055 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000055_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.002G203800.1
Cluster HCAA Clusters: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
101338 No alias pleiotropic drug resistance 11 0.03 Orthogroups_2024-Update
A4A49_31699 No alias pleiotropic drug resistance protein 2 0.03 Orthogroups_2024-Update
At1g15520 No alias ABC transporter G family member 40... 0.03 Orthogroups_2024-Update
Glyma.03G192700 No alias pleiotropic drug resistance 11 0.02 Orthogroups_2024-Update
Glyma.17G206100 No alias pleiotropic drug resistance 12 0.02 Orthogroups_2024-Update
LOC_Os02g32690 No alias pleiotropic drug resistance protein 15, putative, expressed 0.02 Orthogroups_2024-Update
PSME_00000867-RA No alias (q8gu92|pdr2_orysa : 1758.0) Probable pleiotropic drug... 0.02 Orthogroups_2024-Update
PSME_00001270-RA No alias (at1g59870 : 760.0) ATP binding cassette transporter.... 0.02 Orthogroups_2024-Update
PSME_00001761-RA No alias (q5z9s8|pdr12_orysa : 1822.0) Pleiotropic drug... 0.03 Orthogroups_2024-Update
PSME_00013643-RA No alias (q76cu2|pdr1_tobac : 1408.0) Pleiotropic drug resistance... 0.02 Orthogroups_2024-Update
PSME_00037776-RA No alias (at1g59870 : 665.0) ATP binding cassette transporter.... 0.01 Orthogroups_2024-Update
Potri.001G175700 No alias pleiotropic drug resistance 12 0.03 Orthogroups_2024-Update
Potri.006G115000 No alias pleiotropic drug resistance 11 0.03 Orthogroups_2024-Update
Potri.018G074500 No alias pleiotropic drug resistance 4 0.03 Orthogroups_2024-Update
Sobic.005G183900.1 No alias subfamily ABCG transporter 0.03 Orthogroups_2024-Update
Solyc05g053600 No alias Pleiotropic drug resistance ABC transporter (AHRD V3.3... 0.02 Orthogroups_2024-Update
Solyc06g065670 No alias Pleiotropic drug resistance ABC transporter (AHRD V3.3... 0.04 Orthogroups_2024-Update
Sopen03g039810 No alias ABC-2 type transporter 0.03 Orthogroups_2024-Update
Sopen05g032120 No alias ABC-2 type transporter 0.03 Orthogroups_2024-Update
Sopen06g033330 No alias ABC-2 type transporter 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA 16Dec
CC GO:0016020 membrane IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
BP GO:0006476 protein deacetylation IEP Predicted GO
BP GO:0009607 response to biotic stimulus IEP Predicted GO
BP GO:0009617 response to bacterium IEP Predicted GO
BP GO:0009620 response to fungus IEP Predicted GO
BP GO:0009690 cytokinin metabolic process IEP Predicted GO
MF GO:0010277 chlorophyllide a oxygenase [overall] activity IEP Predicted GO
BP GO:0010817 regulation of hormone levels IEP Predicted GO
BP GO:0016575 histone deacetylation IEP Predicted GO
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Predicted GO
MF GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) IEP Predicted GO
MF GO:0019139 cytokinin dehydrogenase activity IEP Predicted GO
BP GO:0034754 cellular hormone metabolic process IEP Predicted GO
BP GO:0035601 protein deacylation IEP Predicted GO
BP GO:0042445 hormone metabolic process IEP Predicted GO
BP GO:0042742 defense response to bacterium IEP Predicted GO
BP GO:0043207 response to external biotic stimulus IEP Predicted GO
MF GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor IEP Predicted GO
BP GO:0050832 defense response to fungus IEP Predicted GO
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Predicted GO
BP GO:0051704 multi-organism process IEP Predicted GO
BP GO:0051707 response to other organism IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
BP GO:0098542 defense response to other organism IEP Predicted GO
BP GO:0098732 macromolecule deacylation IEP Predicted GO
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like 184 366
IPR003439 ABC_transporter-like 892 1044
IPR013581 PDR_assoc 737 801
IPR013525 ABC_2_trans 520 731
IPR013525 ABC_2_trans 1189 1403
IPR029481 ABC_trans_N 109 158
No external refs found!