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  5. Sobic.002G204200.1

Sobic.002G204200.1


Description : RUB ubiquitin-fold protein


Gene families : OG_42_0000048 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000048_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.002G204200.1
Cluster HCAA Clusters: Cluster_59

Target Alias Description ECC score Gene Family Method Actions
163447 No alias ubiquitin 4 0.03 Orthogroups_2024-Update
228943 No alias polyubiquitin 10 0.03 Orthogroups_2024-Update
At5g20620 No alias Polyubiquitin 4 [Source:UniProtKB/Swiss-Prot;Acc:P0CH32] 0.02 Orthogroups_2024-Update
Brara.I02135.1 No alias UBQ ubiquitin-fold protein 0.02 Orthogroups_2024-Update
Glyma.07G199900 No alias polyubiquitin 10 0.08 Orthogroups_2024-Update
Glyma.13G138600 No alias ubiquitin 4 0.04 Orthogroups_2024-Update
HORVU6Hr1G014970.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU6Hr1G026260.1 No alias UBQ ubiquitin-fold protein 0.05 Orthogroups_2024-Update
HORVU7Hr1G029150.2 No alias RUB ubiquitin-fold protein 0.03 Orthogroups_2024-Update
LOC_Os09g25320 No alias ubiquitin family protein, putative, expressed 0.02 Orthogroups_2024-Update
MA_100402g0010 No alias (at4g02890 : 582.0) Polyubiquitin gene containing 4... 0.02 Orthogroups_2024-Update
MA_89348g0010 No alias (at5g03240 : 422.0) encodes ubiquitin that is attached... 0.03 Orthogroups_2024-Update
Potri.004G194000 No alias ubiquitin extension protein 1 0.02 Orthogroups_2024-Update
Potri.011G026600 No alias polyubiquitin 3 0.02 Orthogroups_2024-Update
Seita.1G078900.1 No alias UBQ ubiquitin-fold protein 0.05 Orthogroups_2024-Update
Seita.2G207500.1 No alias RUB ubiquitin-fold protein 0.04 Orthogroups_2024-Update
Seita.5G081000.1 No alias UBQ ubiquitin-fold protein 0.03 Orthogroups_2024-Update
Sobic.002G244600.1 No alias component *(eL40) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Sobic.010G223600.1 No alias UBQ ubiquitin-fold protein 0.05 Orthogroups_2024-Update
evm.model.tig00022075.50 No alias (at3g52590 : 236.0) Ubiquitin extension protein;... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP Predicted GO
MF GO:0004866 endopeptidase inhibitor activity IEP Predicted GO
MF GO:0004869 cysteine-type endopeptidase inhibitor activity IEP Predicted GO
BP GO:0007165 signal transduction IEP Predicted GO
MF GO:0016830 carbon-carbon lyase activity IEP Predicted GO
MF GO:0030170 pyridoxal phosphate binding IEP Predicted GO
MF GO:0030414 peptidase inhibitor activity IEP Predicted GO
BP GO:0035556 intracellular signal transduction IEP Predicted GO
MF GO:0061134 peptidase regulator activity IEP Predicted GO
MF GO:0061135 endopeptidase regulator activity IEP Predicted GO
MF GO:0070279 vitamin B6 binding IEP Predicted GO
InterPro domains Description Start Stop
IPR000626 Ubiquitin_dom 3 74
IPR000626 Ubiquitin_dom 79 150
No external refs found!